Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS330C09f
(412 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
L15188-7|AAA27951.1| 161|Caenorhabditis elegans Ribosomal prote... 137 3e-33
U00047-4|AAA50690.1| 825|Caenorhabditis elegans Hypothetical pr... 29 0.99
AL132853-5|CAB60443.1| 279|Caenorhabditis elegans Hypothetical ... 29 1.3
Z46267-9|CAA86427.2| 889|Caenorhabditis elegans Hypothetical pr... 29 1.7
AL132846-3|CAB60346.2| 1648|Caenorhabditis elegans Hypothetical ... 29 1.7
Z92775-2|CAB07162.2| 382|Caenorhabditis elegans Hypothetical pr... 28 2.3
Z92775-1|CAB07161.2| 379|Caenorhabditis elegans Hypothetical pr... 28 2.3
Z78016-1|CAB01439.1| 276|Caenorhabditis elegans Hypothetical pr... 28 2.3
Z81491-1|CAB04019.1| 181|Caenorhabditis elegans Hypothetical pr... 28 3.0
U64859-9|AAC69090.1| 378|Caenorhabditis elegans Activated in bl... 28 3.0
U64859-8|AAC69096.1| 378|Caenorhabditis elegans Prion-like-(q/n... 28 3.0
Z71177-9|CAA94868.2| 425|Caenorhabditis elegans Hypothetical pr... 27 4.0
Z71177-2|CAA94867.1| 425|Caenorhabditis elegans Hypothetical pr... 27 4.0
AL110490-7|CAD59175.1| 533|Caenorhabditis elegans Hypothetical ... 27 5.3
AL110490-6|CAB54442.2| 687|Caenorhabditis elegans Hypothetical ... 27 5.3
AF016451-13|AAB66007.1| 445|Caenorhabditis elegans Activated in... 27 5.3
AF016451-5|AAB65995.1| 438|Caenorhabditis elegans Activated in ... 27 5.3
AF016451-4|AAB65996.1| 388|Caenorhabditis elegans Activated in ... 27 5.3
AF016451-3|AAB66001.1| 388|Caenorhabditis elegans Prion-like-(q... 27 5.3
Z68218-4|CAA92474.1| 329|Caenorhabditis elegans Hypothetical pr... 27 7.0
U61946-10|AAC24388.1| 1827|Caenorhabditis elegans Hypothetical p... 27 7.0
AL117193-5|CAB54985.1| 335|Caenorhabditis elegans Hypothetical ... 27 7.0
AL117193-4|CAB54984.1| 335|Caenorhabditis elegans Hypothetical ... 27 7.0
AL117193-3|CAB54983.1| 335|Caenorhabditis elegans Hypothetical ... 27 7.0
AL117193-2|CAB54982.1| 335|Caenorhabditis elegans Hypothetical ... 27 7.0
Z81526-4|CAB04267.2| 430|Caenorhabditis elegans Hypothetical pr... 26 9.2
Z81522-5|CAD98731.1| 663|Caenorhabditis elegans Hypothetical pr... 26 9.2
Z81522-4|CAB04233.1| 771|Caenorhabditis elegans Hypothetical pr... 26 9.2
X53244-1|CAA37334.1| 75|Caenorhabditis elegans metallothionein... 26 9.2
U64853-6|AAB04979.1| 75|Caenorhabditis elegans Metallothionein... 26 9.2
M92909-1|AAA28110.1| 75|Caenorhabditis elegans metallothionein... 26 9.2
D17364-1|BAA04180.1| 75|Caenorhabditis elegans metallothionein... 26 9.2
>L15188-7|AAA27951.1| 161|Caenorhabditis elegans Ribosomal protein,
large subunitprotein 21 protein.
Length = 161
Score = 137 bits (332), Expect = 3e-33
Identities = 65/110 (59%), Positives = 82/110 (74%), Gaps = 2/110 (1%)
Frame = +1
Query: 1 MPHKVYHGKTGRVYNVTAHALGVIVNKRVRGRIIPKRINIRVEHVKHSKCRQDFLKRVKE 180
MP K YHG+TGR++NVT A+G+IVNKRVRG I+PKRINIR+EH+K SKCR DFL RVK
Sbjct: 52 MPFKAYHGRTGRIFNVTRGAVGIIVNKRVRGNILPKRINIRIEHIKPSKCRTDFLNRVKS 111
Query: 181 NERLLKEAKAAGKTV-NLKRQPAPPKAAH-IVSGTEKPVLLAPIPYEFVA 324
N+ K AK+AG+ V LKR P P+ AH + + +P LLAP+ +E VA
Sbjct: 112 NDEKRKAAKSAGQPVPALKRLPVAPRGAHTVTTQNNEPELLAPLRFEIVA 161
>U00047-4|AAA50690.1| 825|Caenorhabditis elegans Hypothetical
protein ZK418.6 protein.
Length = 825
Score = 29.5 bits (63), Expect = 0.99
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = +1
Query: 226 NLKRQPAPPKAAHIVSGTE 282
NL+R+PAPPK H+ S E
Sbjct: 462 NLRRRPAPPKQNHVASPAE 480
>AL132853-5|CAB60443.1| 279|Caenorhabditis elegans Hypothetical
protein Y80D3A.9 protein.
Length = 279
Score = 29.1 bits (62), Expect = 1.3
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = -2
Query: 291 DGFLSSTDDVGSFRGSWLSLQVDGLAGSL 205
DG LS D+ RG+WL + G G L
Sbjct: 39 DGMLSGVDEKDVARGTWLGMDAHGKVGML 67
>Z46267-9|CAA86427.2| 889|Caenorhabditis elegans Hypothetical
protein F49E2.5d protein.
Length = 889
Score = 28.7 bits (61), Expect = 1.7
Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Frame = +1
Query: 124 VEHVKHSKCRQDFLKRVKENERLLKEAKAAGKTVN-LKRQPAPPKAAHIVSGTEKPVLLA 300
VE+V + K+N++ K++++ T ++ PAPP+ +V EKPV A
Sbjct: 361 VENVVEKSTTPPATENKKKNKKDKKKSESEKVTEQPVESAPAPPQVEQVVEKVEKPV--A 418
Query: 301 PI 306
P+
Sbjct: 419 PV 420
>AL132846-3|CAB60346.2| 1648|Caenorhabditis elegans Hypothetical
protein Y43D4A.5 protein.
Length = 1648
Score = 28.7 bits (61), Expect = 1.7
Identities = 15/41 (36%), Positives = 20/41 (48%)
Frame = -3
Query: 392 LGTGPPLEXXXXXFS*KYFIGLYATNSYGIGASKTGFSVPL 270
+GTG PL +G A ++GIG + GFS PL
Sbjct: 918 IGTGQPLPPTSVVSDSTSSLGRPAAPAFGIGRAPPGFSEPL 958
>Z92775-2|CAB07162.2| 382|Caenorhabditis elegans Hypothetical
protein C06H5.2 protein.
Length = 382
Score = 28.3 bits (60), Expect = 2.3
Identities = 18/52 (34%), Positives = 28/52 (53%)
Frame = -2
Query: 186 LILFDSLKEVLSALGVLDMLNTDIDALRYNPSANTLVDNHTESMSSHVVHAT 31
LILFD+LK VL ++GVL + I+ L A L +TE + + ++
Sbjct: 200 LILFDALKNVLQSVGVLTTKSVLINWLPSVQIAEILEHFNTEILEDLTIKSS 251
>Z92775-1|CAB07161.2| 379|Caenorhabditis elegans Hypothetical
protein C06H5.1 protein.
Length = 379
Score = 28.3 bits (60), Expect = 2.3
Identities = 18/52 (34%), Positives = 28/52 (53%)
Frame = -2
Query: 186 LILFDSLKEVLSALGVLDMLNTDIDALRYNPSANTLVDNHTESMSSHVVHAT 31
LILFD+LK VL ++GVL + I+ L A L +TE + + ++
Sbjct: 200 LILFDALKNVLQSVGVLTTKSVLINWLPSVQIAEILEHFNTEILEDLTIKSS 251
>Z78016-1|CAB01439.1| 276|Caenorhabditis elegans Hypothetical
protein R186.1 protein.
Length = 276
Score = 28.3 bits (60), Expect = 2.3
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = -2
Query: 291 DGFLSSTDDVGSFRGSWLSLQVDGLAGSL 205
DG LS D + RG+WL L +G G +
Sbjct: 39 DGILSGVDKQENARGTWLGLNENGRIGMM 67
>Z81491-1|CAB04019.1| 181|Caenorhabditis elegans Hypothetical
protein D1086.1 protein.
Length = 181
Score = 27.9 bits (59), Expect = 3.0
Identities = 11/37 (29%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Frame = +3
Query: 6 TQSIPW--KDRSRVQRDCSCSRCDCQQACSRKDYTEA 110
T+ + W D+SR+ D C++ ++ C KD+ +A
Sbjct: 120 TECVQWYFSDKSRMSTDQKCAQFKAKKQCIEKDFGKA 156
>U64859-9|AAC69090.1| 378|Caenorhabditis elegans Activated in
blocked unfolded proteinresponse protein 9 protein.
Length = 378
Score = 27.9 bits (59), Expect = 3.0
Identities = 20/68 (29%), Positives = 25/68 (36%)
Frame = +3
Query: 42 QRDCSCSRCDCQQACSRKDYTEAHQYPC*ACQALQVQTRLP*ESQRE*EATEGSQGCRQD 221
Q CSC + Q+CS + Q P +C Q Q + Q A Q CRQ
Sbjct: 34 QSQCSCQQVQQTQSCSCQSAPVQQQAP--SCSCAQPQQTQTVQVQSTQCAPACQQSCRQQ 91
Query: 222 RQPEETAS 245
Q S
Sbjct: 92 CQSAPAVS 99
>U64859-8|AAC69096.1| 378|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 57
protein.
Length = 378
Score = 27.9 bits (59), Expect = 3.0
Identities = 20/68 (29%), Positives = 25/68 (36%)
Frame = +3
Query: 42 QRDCSCSRCDCQQACSRKDYTEAHQYPC*ACQALQVQTRLP*ESQRE*EATEGSQGCRQD 221
Q CSC + Q+CS + Q P +C Q Q + Q A Q CRQ
Sbjct: 34 QSQCSCQQVQQTQSCSCQSAPVQQQAP--SCSCAQPQQTQTVQVQSTQCAPACQQSCRQQ 91
Query: 222 RQPEETAS 245
Q S
Sbjct: 92 CQSAPAVS 99
>Z71177-9|CAA94868.2| 425|Caenorhabditis elegans Hypothetical
protein AC3.4 protein.
Length = 425
Score = 27.5 bits (58), Expect = 4.0
Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Frame = +3
Query: 42 QRDCSCS-RCDCQQACSRKDYTEAHQYPC*ACQ 137
++ C C+ R +C R YT+ QY C +CQ
Sbjct: 26 RQSCGCAPRVQPSCSCQRTTYTQPQQYSC-SCQ 57
>Z71177-2|CAA94867.1| 425|Caenorhabditis elegans Hypothetical
protein AC3.3 protein.
Length = 425
Score = 27.5 bits (58), Expect = 4.0
Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Frame = +3
Query: 42 QRDCSCS-RCDCQQACSRKDYTEAHQYPC*ACQ 137
++ C C+ R +C R YT+ QY C +CQ
Sbjct: 26 RQSCGCAPRVQPSCSCQRTTYTQPQQYSC-SCQ 57
>AL110490-7|CAD59175.1| 533|Caenorhabditis elegans Hypothetical
protein Y48B6A.6b protein.
Length = 533
Score = 27.1 bits (57), Expect = 5.3
Identities = 16/72 (22%), Positives = 29/72 (40%)
Frame = +1
Query: 100 IPKRINIRVEHVKHSKCRQDFLKRVKENERLLKEAKAAGKTVNLKRQPAPPKAAHIVSGT 279
+P R+ V+ + ++ +R KE+E + + + + R P PP I
Sbjct: 207 LPPTPPARITSVRSDESIEEEERRRKESEETASFEELEAEIMRISRSPVPPPVLSIPPPP 266
Query: 280 EKPVLLAPIPYE 315
+ L IP E
Sbjct: 267 PPNIPLPTIPQE 278
>AL110490-6|CAB54442.2| 687|Caenorhabditis elegans Hypothetical
protein Y48B6A.6a protein.
Length = 687
Score = 27.1 bits (57), Expect = 5.3
Identities = 16/72 (22%), Positives = 29/72 (40%)
Frame = +1
Query: 100 IPKRINIRVEHVKHSKCRQDFLKRVKENERLLKEAKAAGKTVNLKRQPAPPKAAHIVSGT 279
+P R+ V+ + ++ +R KE+E + + + + R P PP I
Sbjct: 207 LPPTPPARITSVRSDESIEEEERRRKESEETASFEELEAEIMRISRSPVPPPVLSIPPPP 266
Query: 280 EKPVLLAPIPYE 315
+ L IP E
Sbjct: 267 PPNIPLPTIPQE 278
>AF016451-13|AAB66007.1| 445|Caenorhabditis elegans Activated in
blocked unfolded proteinresponse protein 8 protein.
Length = 445
Score = 27.1 bits (57), Expect = 5.3
Identities = 20/68 (29%), Positives = 32/68 (47%)
Frame = +3
Query: 42 QRDCSCSRCDCQQACSRKDYTEAHQYPC*ACQALQVQTRLP*ESQRE*EATEGSQGCRQD 221
Q CSC + Q+CS + Q P +C Q QT+ Q + ++T+ + C+Q
Sbjct: 35 QSQCSCQQVQQTQSCSCQSAPVQQQSPSCSCAQPQ-QTQ-----QVQVQSTQCAPACQQS 88
Query: 222 RQPEETAS 245
Q + AS
Sbjct: 89 CQQQCQAS 96
>AF016451-5|AAB65995.1| 438|Caenorhabditis elegans Activated in
blocked unfolded proteinresponse protein 7 protein.
Length = 438
Score = 27.1 bits (57), Expect = 5.3
Identities = 20/68 (29%), Positives = 32/68 (47%)
Frame = +3
Query: 42 QRDCSCSRCDCQQACSRKDYTEAHQYPC*ACQALQVQTRLP*ESQRE*EATEGSQGCRQD 221
Q CSC + Q+CS + Q P +C Q QT+ Q + ++T+ + C+Q
Sbjct: 35 QSQCSCQQVQQTQSCSCQSAPVQQQSPSCSCAQPQ-QTQ-----QVQVQSTQCAPACQQS 88
Query: 222 RQPEETAS 245
Q + AS
Sbjct: 89 CQQQCQAS 96
>AF016451-4|AAB65996.1| 388|Caenorhabditis elegans Activated in
blocked unfolded proteinresponse protein 6 protein.
Length = 388
Score = 27.1 bits (57), Expect = 5.3
Identities = 20/68 (29%), Positives = 32/68 (47%)
Frame = +3
Query: 42 QRDCSCSRCDCQQACSRKDYTEAHQYPC*ACQALQVQTRLP*ESQRE*EATEGSQGCRQD 221
Q CSC + Q+CS + Q P +C Q QT+ Q + ++T+ + C+Q
Sbjct: 35 QSQCSCQQVQQTQSCSCQSAPVQQQSPSCSCAQPQ-QTQ-----QVQVQSTQCAPACQQS 88
Query: 222 RQPEETAS 245
Q + AS
Sbjct: 89 CQQQCQAS 96
>AF016451-3|AAB66001.1| 388|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 5
protein.
Length = 388
Score = 27.1 bits (57), Expect = 5.3
Identities = 20/68 (29%), Positives = 32/68 (47%)
Frame = +3
Query: 42 QRDCSCSRCDCQQACSRKDYTEAHQYPC*ACQALQVQTRLP*ESQRE*EATEGSQGCRQD 221
Q CSC + Q+CS + Q P +C Q QT+ Q + ++T+ + C+Q
Sbjct: 35 QSQCSCQQVQQTQSCSCQSAPVQQQSPSCSCAQPQ-QTQ-----QVQVQSTQCAPACQQS 88
Query: 222 RQPEETAS 245
Q + AS
Sbjct: 89 CQQQCQAS 96
>Z68218-4|CAA92474.1| 329|Caenorhabditis elegans Hypothetical
protein K01H12.4 protein.
Length = 329
Score = 26.6 bits (56), Expect = 7.0
Identities = 29/98 (29%), Positives = 42/98 (42%), Gaps = 4/98 (4%)
Frame = +1
Query: 43 NVTAHALGVIVNKRVRGRIIPKRINIRVEHVKHSKCRQDFLKRVKENERLLKEAKAAGKT 222
+++A NK + + I K +E +KH KCR LK+ K ++ K AG T
Sbjct: 143 SISATTASSCSNKSLYRKHIEKLAIEPLEDIKHLKCRG--LKKSKPDDLFPKATYDAG-T 199
Query: 223 VNLKRQPAPPKAAHI----VSGTEKPVLLAPIPYEFVA 324
K +P + S T K LA P EFV+
Sbjct: 200 GKPKMALSPSSMVSVDLSYASTTAKSNSLAYQPMEFVS 237
>U61946-10|AAC24388.1| 1827|Caenorhabditis elegans Hypothetical
protein F47C12.1 protein.
Length = 1827
Score = 26.6 bits (56), Expect = 7.0
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = +3
Query: 60 SRCDCQQACSRKDYTEAHQYPC*AC 134
S +C+QAC Y+ + PC AC
Sbjct: 1610 SASECKQACKTGTYSNSGLEPCSAC 1634
>AL117193-5|CAB54985.1| 335|Caenorhabditis elegans Hypothetical
protein Y105C5A.6 protein.
Length = 335
Score = 26.6 bits (56), Expect = 7.0
Identities = 12/39 (30%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
Frame = +3
Query: 42 QRDCSCS-RCDCQQACSRKDYTEAHQYPC*ACQALQVQT 155
++ C C+ + +C R YT+ QY C VQT
Sbjct: 26 RQSCGCAPKIQPSCSCQRTTYTQPQQYSCSCQNTAPVQT 64
>AL117193-4|CAB54984.1| 335|Caenorhabditis elegans Hypothetical
protein Y105C5A.5 protein.
Length = 335
Score = 26.6 bits (56), Expect = 7.0
Identities = 12/39 (30%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
Frame = +3
Query: 42 QRDCSCS-RCDCQQACSRKDYTEAHQYPC*ACQALQVQT 155
++ C C+ + +C R YT+ QY C VQT
Sbjct: 26 RQSCGCAPKVQPSCSCQRTTYTQPQQYSCSCQNTAPVQT 64
>AL117193-3|CAB54983.1| 335|Caenorhabditis elegans Hypothetical
protein Y105C5A.4 protein.
Length = 335
Score = 26.6 bits (56), Expect = 7.0
Identities = 12/39 (30%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
Frame = +3
Query: 42 QRDCSCS-RCDCQQACSRKDYTEAHQYPC*ACQALQVQT 155
++ C C+ + +C R YT+ QY C VQT
Sbjct: 26 RQSCGCAPKVQPSCSCQRTTYTQPQQYSCSCQNTAPVQT 64
>AL117193-2|CAB54982.1| 335|Caenorhabditis elegans Hypothetical
protein Y105C5A.3 protein.
Length = 335
Score = 26.6 bits (56), Expect = 7.0
Identities = 12/39 (30%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
Frame = +3
Query: 42 QRDCSCS-RCDCQQACSRKDYTEAHQYPC*ACQALQVQT 155
++ C C+ + +C R YT+ QY C VQT
Sbjct: 26 RQSCGCAPKIQPSCSCQRTTYTQPQQYSCSCQNTAPVQT 64
>Z81526-4|CAB04267.2| 430|Caenorhabditis elegans Hypothetical
protein F33H2.7 protein.
Length = 430
Score = 26.2 bits (55), Expect = 9.2
Identities = 8/18 (44%), Positives = 10/18 (55%)
Frame = +3
Query: 72 CQQACSRKDYTEAHQYPC 125
C C RKD+ HQ+ C
Sbjct: 50 CTLKCQRKDWKSCHQFEC 67
>Z81522-5|CAD98731.1| 663|Caenorhabditis elegans Hypothetical
protein F32B4.4b protein.
Length = 663
Score = 26.2 bits (55), Expect = 9.2
Identities = 20/79 (25%), Positives = 34/79 (43%), Gaps = 4/79 (5%)
Frame = +1
Query: 79 KRVRGRIIPKRINI----RVEHVKHSKCRQDFLKRVKENERLLKEAKAAGKTVNLKRQPA 246
KR R +P I+ R H H +QD + + E+ +E ++ T + +RQ +
Sbjct: 239 KRSVERSVPNNISTSELRRKHHQIHVTVQQDAPRASYQTEQYARERSSSTTTSSRRRQVS 298
Query: 247 PPKAAHIVSGTEKPVLLAP 303
P ++ E P AP
Sbjct: 299 PDRSEQRRHRDEPPPRRAP 317
>Z81522-4|CAB04233.1| 771|Caenorhabditis elegans Hypothetical
protein F32B4.4a protein.
Length = 771
Score = 26.2 bits (55), Expect = 9.2
Identities = 20/79 (25%), Positives = 34/79 (43%), Gaps = 4/79 (5%)
Frame = +1
Query: 79 KRVRGRIIPKRINI----RVEHVKHSKCRQDFLKRVKENERLLKEAKAAGKTVNLKRQPA 246
KR R +P I+ R H H +QD + + E+ +E ++ T + +RQ +
Sbjct: 347 KRSVERSVPNNISTSELRRKHHQIHVTVQQDAPRASYQTEQYARERSSSTTTSSRRRQVS 406
Query: 247 PPKAAHIVSGTEKPVLLAP 303
P ++ E P AP
Sbjct: 407 PDRSEQRRHRDEPPPRRAP 425
>X53244-1|CAA37334.1| 75|Caenorhabditis elegans metallothionein-I
protein.
Length = 75
Score = 26.2 bits (55), Expect = 9.2
Identities = 9/23 (39%), Positives = 11/23 (47%)
Frame = +3
Query: 48 DCSCSRCDCQQACSRKDYTEAHQ 116
DC C+ C C + D T HQ
Sbjct: 47 DCKCANCHCAEQKQCGDKTHQHQ 69
>U64853-6|AAB04979.1| 75|Caenorhabditis elegans Metallothionein
protein 1 protein.
Length = 75
Score = 26.2 bits (55), Expect = 9.2
Identities = 9/23 (39%), Positives = 11/23 (47%)
Frame = +3
Query: 48 DCSCSRCDCQQACSRKDYTEAHQ 116
DC C+ C C + D T HQ
Sbjct: 47 DCKCANCHCAEQKQCGDKTHQHQ 69
>M92909-1|AAA28110.1| 75|Caenorhabditis elegans metallothionein I
protein.
Length = 75
Score = 26.2 bits (55), Expect = 9.2
Identities = 9/23 (39%), Positives = 11/23 (47%)
Frame = +3
Query: 48 DCSCSRCDCQQACSRKDYTEAHQ 116
DC C+ C C + D T HQ
Sbjct: 47 DCKCANCHCAEQKQCGDKTHQHQ 69
>D17364-1|BAA04180.1| 75|Caenorhabditis elegans metallothionein-I
protein.
Length = 75
Score = 26.2 bits (55), Expect = 9.2
Identities = 9/23 (39%), Positives = 11/23 (47%)
Frame = +3
Query: 48 DCSCSRCDCQQACSRKDYTEAHQ 116
DC C+ C C + D T HQ
Sbjct: 47 DCKCANCHCAEQKQCGDKTHQHQ 69
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,359,399
Number of Sequences: 27780
Number of extensions: 172281
Number of successful extensions: 646
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 611
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 645
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 662437636
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -