Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS330C08f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1A6.05c |||triacylglycerol lipase|Schizosaccharomyces pombe|...    26   3.0  
SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|c...    26   3.0  
SPAC1B3.17 |clr2||chromatin silencing protein Clr2|Schizosacchar...    26   3.9  

>SPAC1A6.05c |||triacylglycerol lipase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 483

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = -2

Query: 190 ISSSNVPSLFVRATLQPVSDTTANVAISCVKNSIFFCD 77
           +++ +VP LF RATL      T  V+  CV ++  + D
Sbjct: 290 VATCSVPFLFKRATLWERDPLTREVSAFCVTDAPLWMD 327


>SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1315

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 14/33 (42%), Positives = 16/33 (48%)
 Frame = -2

Query: 274 PAFMSASVHTPLSCEVCSNLACMSLLCRISSSN 176
           P   SA   TP+ C   SN+    L   ISSSN
Sbjct: 403 PERSSAVKTTPMKCSSLSNIYTSDLFFAISSSN 435


>SPAC1B3.17 |clr2||chromatin silencing protein
           Clr2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 537

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 13/39 (33%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = -2

Query: 199 LCRISSSNVPSLFVRATLQPVSDTTANV-AISCVKNSIF 86
           LC IS+S++PS+  + +   +SD   N   I C + S++
Sbjct: 383 LCVISTSSLPSVLQKTSFMYISDIYVNEDDIVCFQGSLW 421


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,029,526
Number of Sequences: 5004
Number of extensions: 39723
Number of successful extensions: 120
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)