Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS330C08f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z79605-7|CAB01908.1| 1440|Caenorhabditis elegans Hypothetical pr...    29   2.0  
Z79604-7|CAB01901.1| 1440|Caenorhabditis elegans Hypothetical pr...    29   2.0  
Z29967-1|CAA82854.1| 1440|Caenorhabditis elegans lin-15B protein.      29   2.0  
U10413-1|AAA20089.1| 1440|Caenorhabditis elegans lin-15B protein...    29   2.0  
U10412-1|AAA20088.1| 1440|Caenorhabditis elegans lin-15B protein...    29   2.0  
U64598-4|AAN72420.1|  418|Caenorhabditis elegans Hypothetical pr...    29   2.7  
U64598-3|AAK39213.1|  432|Caenorhabditis elegans Hypothetical pr...    29   2.7  
Z47808-8|CAA87777.2| 1087|Caenorhabditis elegans Hypothetical pr...    28   3.5  
AC024206-4|AAK67240.1|  564|Caenorhabditis elegans Hypothetical ...    27   6.2  
AC024206-3|AAF36052.1|  561|Caenorhabditis elegans Hypothetical ...    27   6.2  
U41532-4|AAK68320.1|  767|Caenorhabditis elegans Hypothetical pr...    27   8.1  
U41532-3|AAK68319.1|  797|Caenorhabditis elegans Hypothetical pr...    27   8.1  
AF025463-1|AAB71008.3|  871|Caenorhabditis elegans Hypothetical ...    27   8.1  

>Z79605-7|CAB01908.1| 1440|Caenorhabditis elegans Hypothetical
           protein ZK662.4 protein.
          Length = 1440

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 15/51 (29%), Positives = 25/51 (49%)
 Frame = -2

Query: 280 HFPAFMSASVHTPLSCEVCSNLACMSLLCRISSSNVPSLFVRATLQPVSDT 128
           H PAF+    H   +C +        L+ +IS+S+ P +    T+ P+S T
Sbjct: 90  HEPAFLELMKHVDPNCVIPPTNVTKKLVDKISTSSKPQVNYTKTVGPLSVT 140


>Z79604-7|CAB01901.1| 1440|Caenorhabditis elegans Hypothetical
           protein ZK662.4 protein.
          Length = 1440

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 15/51 (29%), Positives = 25/51 (49%)
 Frame = -2

Query: 280 HFPAFMSASVHTPLSCEVCSNLACMSLLCRISSSNVPSLFVRATLQPVSDT 128
           H PAF+    H   +C +        L+ +IS+S+ P +    T+ P+S T
Sbjct: 90  HEPAFLELMKHVDPNCVIPPTNVTKKLVDKISTSSKPQVNYTKTVGPLSVT 140


>Z29967-1|CAA82854.1| 1440|Caenorhabditis elegans lin-15B protein.
          Length = 1440

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 15/51 (29%), Positives = 25/51 (49%)
 Frame = -2

Query: 280 HFPAFMSASVHTPLSCEVCSNLACMSLLCRISSSNVPSLFVRATLQPVSDT 128
           H PAF+    H   +C +        L+ +IS+S+ P +    T+ P+S T
Sbjct: 90  HEPAFLELMKHVDPNCVIPPTNVTKKLVDKISTSSKPQVNYTKTVGPLSVT 140


>U10413-1|AAA20089.1| 1440|Caenorhabditis elegans lin-15B protein
           protein.
          Length = 1440

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 15/51 (29%), Positives = 25/51 (49%)
 Frame = -2

Query: 280 HFPAFMSASVHTPLSCEVCSNLACMSLLCRISSSNVPSLFVRATLQPVSDT 128
           H PAF+    H   +C +        L+ +IS+S+ P +    T+ P+S T
Sbjct: 90  HEPAFLELMKHVDPNCVIPPTNVTKKLVDKISTSSKPQVNYTKTVGPLSVT 140


>U10412-1|AAA20088.1| 1440|Caenorhabditis elegans lin-15B protein
           protein.
          Length = 1440

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 15/51 (29%), Positives = 25/51 (49%)
 Frame = -2

Query: 280 HFPAFMSASVHTPLSCEVCSNLACMSLLCRISSSNVPSLFVRATLQPVSDT 128
           H PAF+    H   +C +        L+ +IS+S+ P +    T+ P+S T
Sbjct: 90  HEPAFLELMKHVDPNCVIPPTNVTKKLVDKISTSSKPQVNYTKTVGPLSVT 140


>U64598-4|AAN72420.1|  418|Caenorhabditis elegans Hypothetical
           protein C52B9.3b protein.
          Length = 418

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 17/64 (26%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
 Frame = +3

Query: 81  QKKMEFLTQLIATLAVVSLTGCSVARTNKDGTFELLILHNN--DMHAKFEQTSQLSGVCT 254
           QK ++    ++  +     TGCS  +       ELL+L+N   D     E+ + L+   +
Sbjct: 14  QKYLDDDEDIVQDIIFTGFTGCSPCKMASQRALELLVLNNMNIDTIGDSEKLATLASHVS 73

Query: 255 EADM 266
           EAD+
Sbjct: 74  EADL 77


>U64598-3|AAK39213.1|  432|Caenorhabditis elegans Hypothetical
           protein C52B9.3a protein.
          Length = 432

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 17/64 (26%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
 Frame = +3

Query: 81  QKKMEFLTQLIATLAVVSLTGCSVARTNKDGTFELLILHNN--DMHAKFEQTSQLSGVCT 254
           QK ++    ++  +     TGCS  +       ELL+L+N   D     E+ + L+   +
Sbjct: 14  QKYLDDDEDIVQDIIFTGFTGCSPCKMASQRALELLVLNNMNIDTIGDSEKLATLASHVS 73

Query: 255 EADM 266
           EAD+
Sbjct: 74  EADL 77


>Z47808-8|CAA87777.2| 1087|Caenorhabditis elegans Hypothetical
           protein D2013.8a protein.
          Length = 1087

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 13/34 (38%), Positives = 22/34 (64%)
 Frame = +2

Query: 74  CITKKNGVFNAADSNVSSGVAHGLQRGAYEQGRY 175
           CIT+ + V+ +   +VSS +AHGL +  Y+  +Y
Sbjct: 350 CITR-SVVYTSPSLDVSSRIAHGLSQEGYKLTKY 382


>AC024206-4|AAK67240.1|  564|Caenorhabditis elegans Hypothetical
           protein Y74C9A.4b protein.
          Length = 564

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +2

Query: 257 SRHECRKMLRRFREGRLPGKAGTQSSSDRRR 349
           SRHEC+  +  FR  R+P  A  ++ + RR+
Sbjct: 292 SRHECKPCILYFRLMRVPRPASLRALTKRRQ 322


>AC024206-3|AAF36052.1|  561|Caenorhabditis elegans Hypothetical
           protein Y74C9A.4a protein.
          Length = 561

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +2

Query: 257 SRHECRKMLRRFREGRLPGKAGTQSSSDRRR 349
           SRHEC+  +  FR  R+P  A  ++ + RR+
Sbjct: 289 SRHECKPCILYFRLMRVPRPASLRALTKRRQ 319


>U41532-4|AAK68320.1|  767|Caenorhabditis elegans Hypothetical
           protein F11D5.3b protein.
          Length = 767

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = -2

Query: 157 RATLQPVSDTTANVAISCVKNSIFFCDARD*LTFFNV 47
           R  + PVS++T  V   C++  +F C   D L F+NV
Sbjct: 129 RIRIVPVSNSTRTV---CMRVEVFGCPFDDSLVFYNV 162


>U41532-3|AAK68319.1|  797|Caenorhabditis elegans Hypothetical
           protein F11D5.3a protein.
          Length = 797

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = -2

Query: 157 RATLQPVSDTTANVAISCVKNSIFFCDARD*LTFFNV 47
           R  + PVS++T  V   C++  +F C   D L F+NV
Sbjct: 159 RIRIVPVSNSTRTV---CMRVEVFGCPFDDSLVFYNV 192


>AF025463-1|AAB71008.3|  871|Caenorhabditis elegans Hypothetical
           protein K10B4.3 protein.
          Length = 871

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = -2

Query: 196 CRISSSNVPSLFVRATLQPVSDTTANVAISCVKN 95
           C+I+S  + SLF+    +PV   T  VA+ C+ +
Sbjct: 109 CKIASDLLSSLFLHYGNKPVMTLTIPVALKCLNS 142


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,556,849
Number of Sequences: 27780
Number of extensions: 240476
Number of successful extensions: 841
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 808
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 841
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)