Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS330C08f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    29   0.038
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    22   3.3  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   5.8  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    21   5.8  

>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 28.7 bits (61), Expect = 0.038
 Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
 Frame = -1

Query: 341 CLSCFACLLYQVSDPRETSVAFSCIH--VGFGTHSA 240
           C  CF C  YQ+ D ++ +   SC    V   THSA
Sbjct: 606 CWHCFNCTQYQIRDHKDVTQCISCRQGTVPDETHSA 641


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 11/37 (29%), Positives = 18/37 (48%)
 Frame = -2

Query: 229 VCSNLACMSLLCRISSSNVPSLFVRATLQPVSDTTAN 119
           VC+  +C S+L  I   +V         +PV+D  A+
Sbjct: 371 VCTVNSCTSMLSGIVIFSVVGFMAHEQQKPVADVAAS 407


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 7/21 (33%), Positives = 8/21 (38%)
 Frame = -3

Query: 207 CHCCAGSAAQMYRPCSYAPRC 145
           CHCC   A      C    +C
Sbjct: 747 CHCCDFDACDCEMTCPAGCKC 767


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 6/14 (42%), Positives = 8/14 (57%)
 Frame = -3

Query: 207 CHCCAGSAAQMYRP 166
           C CC G   + Y+P
Sbjct: 406 CACCPGRVRRRYQP 419


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 133,377
Number of Sequences: 438
Number of extensions: 2883
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)