Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS330C06f
(521 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC6F6.09 |||NuA4 histone acetyltransferase complex subunit |Sc... 27 1.3
SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr 1|... 27 2.2
SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyce... 27 2.2
SPBC428.20c |alp6|SPBC902.01c|gamma tubulin complex Spc98/GCP3 s... 26 3.9
SPBC20F10.08c |||conserved eukaryotic protein|Schizosaccharomyce... 25 6.8
SPCC622.16c |epe1||Jmjc domain chromatin associated protein Epe1... 25 6.8
SPAC25B8.03 |||phosphatidylserine decarboxylase|Schizosaccharomy... 25 9.0
SPAC1002.10c |sgt1||SGT1 family transcriptional regulator Sgt1|S... 25 9.0
SPBC13G1.10c |mug81||ATP-dependent RNA helicase Slh1|Schizosacch... 25 9.0
SPAC7D4.04 |taf1||Taz1 interacting factor 1|Schizosaccharomyces ... 25 9.0
SPAC2C4.14c |ppk11||PAK-related kinase Ppk11|Schizosaccharomyces... 25 9.0
>SPAC6F6.09 |||NuA4 histone acetyltransferase complex subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 138
Score = 27.5 bits (58), Expect = 1.3
Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Frame = -1
Query: 353 SASSTLTPHFRGPLYILVHQCRATPGR-NDSETQPHRKRRRSA 228
S SS +PH R P Y L + R +E+ H RRRS+
Sbjct: 92 SLSSLSSPHTRSPAYDLDDSTETSRRRKRKNESDSHEGRRRSS 134
>SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1372
Score = 26.6 bits (56), Expect = 2.2
Identities = 9/17 (52%), Positives = 15/17 (88%)
Frame = -3
Query: 474 VVQLSCTPIELRYEESI 424
+ +LSCTP++L+Y ES+
Sbjct: 181 IEKLSCTPLKLKYVESL 197
>SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 960
Score = 26.6 bits (56), Expect = 2.2
Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
Frame = -2
Query: 127 NLYTFL--SIDDVRHSSQYLSLSKETLRTFFLGS*SLPL 17
N++ FL S++D Q+L+L+K FFL SLPL
Sbjct: 738 NVFVFLNVSLEDDFDQLQFLTLAKRKSCKFFLFGLSLPL 776
>SPBC428.20c |alp6|SPBC902.01c|gamma tubulin complex Spc98/GCP3
subunit Alp6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 821
Score = 25.8 bits (54), Expect = 3.9
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = +2
Query: 8 DSTQWKTLTAQEKCSQGLLTERQVLAAVSYVIYG 109
DS++ T L+TE +L+++SYV+ G
Sbjct: 170 DSSRLNRSTETSSVQHTLITEADLLSSISYVLQG 203
>SPBC20F10.08c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 747
Score = 25.0 bits (52), Expect = 6.8
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = +1
Query: 331 GVKVEEALPVFSESNKPEKYTQILSREVVAANTLFVS 441
G +EE P+F + + EK T I+S ++V + + S
Sbjct: 143 GSLIEEPRPLFLDPSWKEKVTSIMSPQMVDPSKMISS 179
>SPCC622.16c |epe1||Jmjc domain chromatin associated protein
Epe1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 948
Score = 25.0 bits (52), Expect = 6.8
Identities = 11/28 (39%), Positives = 14/28 (50%)
Frame = -1
Query: 266 SETQPHRKRRRSASLLRDRCTPRLKRSR 183
S QPH R+S R RC R +R +
Sbjct: 102 SFAQPHFSERQSVDKTRSRCLSRNRRRK 129
>SPAC25B8.03 |||phosphatidylserine decarboxylase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 516
Score = 24.6 bits (51), Expect = 9.0
Identities = 14/45 (31%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Frame = +2
Query: 353 CPFSASPTNQKNIRRYCPEKLLQQILSSY-LNSMGVHDNWTTQNS 484
CPFSA ++R C ++L S++ LN++G D+ +++S
Sbjct: 271 CPFSAFEDISNSVRSSCGKRLSPS--SNFDLNNLGGDDDLRSESS 313
>SPAC1002.10c |sgt1||SGT1 family transcriptional regulator
Sgt1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 590
Score = 24.6 bits (51), Expect = 9.0
Identities = 8/19 (42%), Positives = 13/19 (68%)
Frame = +2
Query: 281 EWRDTDGQEYKVDLENGEL 337
+W D D +Y+V + NGE+
Sbjct: 130 KWIDEDNSDYRVWIHNGEV 148
>SPBC13G1.10c |mug81||ATP-dependent RNA helicase
Slh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1935
Score = 24.6 bits (51), Expect = 9.0
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = -1
Query: 416 TTSLDSICVYFSGLLDSLKTGSASSTLTPHFRGPLY 309
T+ S + GLLDSLK+ + + RGPL+
Sbjct: 159 TSEAGSSATHGQGLLDSLKSRPRRFSRSRDNRGPLF 194
>SPAC7D4.04 |taf1||Taz1 interacting factor 1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 926
Score = 24.6 bits (51), Expect = 9.0
Identities = 9/22 (40%), Positives = 15/22 (68%)
Frame = +3
Query: 255 LRFRIISSWSGATLMDKNIKWT 320
+RFR+ S+SG + N++WT
Sbjct: 1 MRFRLNDSFSGKSWTIDNVQWT 22
>SPAC2C4.14c |ppk11||PAK-related kinase Ppk11|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 312
Score = 24.6 bits (51), Expect = 9.0
Identities = 7/22 (31%), Positives = 16/22 (72%)
Frame = +2
Query: 374 TNQKNIRRYCPEKLLQQILSSY 439
+ K I++YCP ++++++SY
Sbjct: 253 SKHKFIKKYCPNTSVKEVVASY 274
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,270,792
Number of Sequences: 5004
Number of extensions: 46568
Number of successful extensions: 158
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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