Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS330C05f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0202 - 1638978-1639571                                           64   9e-11
02_01_0158 - 1103461-1104186                                           64   9e-11
10_01_0130 + 1540412-1541173                                           29   3.0  
11_06_0416 + 23307984-23308281,23310083-23310900                       28   4.0  
08_01_0229 + 1834102-1834358,1834442-1834901                           28   5.2  
10_08_0313 - 16677849-16679060,16679158-16679244,16679749-16680111     27   9.1  
09_02_0515 + 10121849-10122149,10132151-10132187,10132314-101327...    27   9.1  
07_03_0592 + 19805647-19805817,19805960-19806332,19807347-19807474     27   9.1  

>08_01_0202 - 1638978-1639571
          Length = 197

 Score = 63.7 bits (148), Expect = 9e-11
 Identities = 29/64 (45%), Positives = 43/64 (67%)
 Frame = +3

Query: 195 AEKVSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVA 374
           +E+V GTVKWF+   G+GFI  +D  ED+FVHQ+++  +      RS+ DG+ VEF+V +
Sbjct: 3   SERVKGTVKWFDATKGFGFITPDDGGEDLFVHQSSLKSD----GYRSLNDGDVVEFSVGS 58

Query: 375 GEKG 386
           G  G
Sbjct: 59  GNDG 62


>02_01_0158 - 1103461-1104186
          Length = 241

 Score = 63.7 bits (148), Expect = 9e-11
 Identities = 34/73 (46%), Positives = 46/73 (63%), Gaps = 1/73 (1%)
 Frame = +3

Query: 195 AEKVSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVA 374
           A +  GTVKWFN   G+GFI+ +D  ED+FVHQ++I  +      RS+ +GE VEFA+  
Sbjct: 4   AARHRGTVKWFNDTKGFGFISPDDGSEDLFVHQSSIKAD----GFRSLAEGEQVEFAISE 59

Query: 375 GEKG-FEAAGVTG 410
            E G  +A  VTG
Sbjct: 60  SEDGRTKAVDVTG 72


>10_01_0130 + 1540412-1541173
          Length = 253

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 17/52 (32%), Positives = 25/52 (48%)
 Frame = +3

Query: 315 PRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGSRW*ASKRLTLCCRQAPWLP 470
           P +A  +V   EA E A+   E  F    +TG+R  A++   LC   +P  P
Sbjct: 8   PPRASAAVSPNEAAEAALRLAENMFLRGDLTGARREAARARALCPAPSPLHP 59


>11_06_0416 + 23307984-23308281,23310083-23310900
          Length = 371

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -2

Query: 496 HLDEGNIGGGSHGACLQHKVSLLLAHH 416
           HLD+ N+ G  +G   + K+SLL A H
Sbjct: 89  HLDDPNVDGVRNGVRARFKISLLAAAH 115


>08_01_0229 + 1834102-1834358,1834442-1834901
          Length = 238

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 9/12 (75%), Positives = 11/12 (91%)
 Frame = -1

Query: 92  GVIGERRWWQRW 57
           GV+GERR W+RW
Sbjct: 134 GVVGERRRWRRW 145


>10_08_0313 - 16677849-16679060,16679158-16679244,16679749-16680111
          Length = 553

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = +3

Query: 342 DGEAVEFAVVAGEKGFEAAGVTGSRW*ASKRLTLCCRQAP 461
           DG+  +   VAGEKG E  G +      +++  + CR  P
Sbjct: 89  DGDPDDVVAVAGEKGSEGDGSSDELQIVAEKGPVACRDFP 128


>09_02_0515 +
           10121849-10122149,10132151-10132187,10132314-10132790,
           10133184-10133733
          Length = 454

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = +3

Query: 204 VSGTVKWFNVKSGYGFINRNDTKE 275
           V+  VKW  +KSG  F   N  KE
Sbjct: 195 VAAAVKWLKIKSGQAFAVENYVKE 218


>07_03_0592 + 19805647-19805817,19805960-19806332,19807347-19807474
          Length = 223

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 15/28 (53%), Positives = 16/28 (57%)
 Frame = +3

Query: 294 TAIARNNPRKAVRSVGDGEAVEFAVVAG 377
           TAI  N    AV +VGD  AV F V AG
Sbjct: 68  TAILINGETLAVANVGDSRAVAFDVRAG 95


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,987,673
Number of Sequences: 37544
Number of extensions: 236587
Number of successful extensions: 938
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 908
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 936
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)