Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS330C05f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81525-8|CAB04257.1|  208|Caenorhabditis elegans Hypothetical pr...   113   7e-26
U88173-8|AAK21380.1|  267|Caenorhabditis elegans C.elegans y-box...    77   8e-15
U80450-3|AAB37828.1|  265|Caenorhabditis elegans C.elegans y-box...    73   1e-13
Z73424-7|CAA97783.1|  294|Caenorhabditis elegans Hypothetical pr...    70   1e-12
AL023839-3|CAA19509.1|  294|Caenorhabditis elegans Hypothetical ...    70   1e-12
Z81494-3|CAB61009.1|  196|Caenorhabditis elegans Hypothetical pr...    52   2e-07
Z81494-2|CAB61008.1|  227|Caenorhabditis elegans Hypothetical pr...    52   2e-07
U75915-1|AAB49759.1|  227|Caenorhabditis elegans Lin-28 protein.       52   2e-07
U75912-1|AAC47476.1|  227|Caenorhabditis elegans LIN-28 protein.       52   2e-07
Z81122-3|CAB54313.1| 1076|Caenorhabditis elegans Hypothetical pr...    28   4.7  
Z81122-2|CAB03354.1| 1074|Caenorhabditis elegans Hypothetical pr...    28   4.7  

>Z81525-8|CAB04257.1|  208|Caenorhabditis elegans Hypothetical
           protein F33A8.3 protein.
          Length = 208

 Score =  113 bits (272), Expect = 7e-26
 Identities = 52/74 (70%), Positives = 57/74 (77%)
 Frame = +3

Query: 189 VIAEKVSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAV 368
           V A KV GTVKWFNVK+GYGFINR DT ED+FVHQTAI  NNP K +RS+GD E V F +
Sbjct: 16  VKATKVKGTVKWFNVKNGYGFINRTDTNEDIFVHQTAIINNNPNKYLRSLGDNEEVMFDI 75

Query: 369 VAGEKGFEAAGVTG 410
           V G KG EAA VTG
Sbjct: 76  VEGSKGLEAASVTG 89



 Score = 32.7 bits (71), Expect = 0.16
 Identities = 14/27 (51%), Positives = 18/27 (66%)
 Frame = +1

Query: 376 GRKALKQLVLLGPGGEPVKGSPYAADK 456
           G K L+   + GP G PV+GS YAAD+
Sbjct: 78  GSKGLEAASVTGPDGGPVQGSKYAADR 104


>U88173-8|AAK21380.1|  267|Caenorhabditis elegans C.elegans y-box
           protein 2 protein.
          Length = 267

 Score = 77.0 bits (181), Expect = 8e-15
 Identities = 38/74 (51%), Positives = 52/74 (70%), Gaps = 1/74 (1%)
 Frame = +3

Query: 192 IAEKVSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRK-AVRSVGDGEAVEFAV 368
           I   + G VKW++V   YGFI+RND ++D+FVHQTAIA++   K  +R++GD E V F +
Sbjct: 62  ITTGLQGKVKWYSVLRRYGFISRNDGEKDIFVHQTAIAKSATEKFYLRTLGDDEEVLFDL 121

Query: 369 VAGEKGFEAAGVTG 410
           V G+ G EAA VTG
Sbjct: 122 VEGKNGPEAANVTG 135


>U80450-3|AAB37828.1|  265|Caenorhabditis elegans C.elegans y-box
           protein 3 protein.
          Length = 265

 Score = 72.9 bits (171), Expect = 1e-13
 Identities = 36/75 (48%), Positives = 53/75 (70%), Gaps = 1/75 (1%)
 Frame = +3

Query: 189 VIAEKVSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRK-AVRSVGDGEAVEFA 365
           V+   + G VKW++V   YGFI+R+D ++DVFVHQTAI++++  K  +R++ D E V F 
Sbjct: 59  VLTAGLQGKVKWYSVLRRYGFISRSDGEKDVFVHQTAISKSDTEKFYLRTLADEEEVLFD 118

Query: 366 VVAGEKGFEAAGVTG 410
           +V G+ G EAA VTG
Sbjct: 119 LVDGKNGPEAANVTG 133


>Z73424-7|CAA97783.1|  294|Caenorhabditis elegans Hypothetical
           protein Y39A1C.3 protein.
          Length = 294

 Score = 69.7 bits (163), Expect = 1e-12
 Identities = 39/78 (50%), Positives = 50/78 (64%), Gaps = 4/78 (5%)
 Frame = +3

Query: 189 VIAEKVSGTVKWFNVKSGYGFINRN---DTKEDVFVHQTAIARNNPRK-AVRSVGDGEAV 356
           VI   V G VKWF+V+  YGF+ R+   D  ED FVHQTAI +++  K  +R++ D E V
Sbjct: 84  VIETGVKGHVKWFSVRGRYGFVARDKPTDENEDFFVHQTAITKSSTIKFYLRTLDDDEPV 143

Query: 357 EFAVVAGEKGFEAAGVTG 410
            F +V G KG EAA VTG
Sbjct: 144 VFDIVEGLKGPEAANVTG 161


>AL023839-3|CAA19509.1|  294|Caenorhabditis elegans Hypothetical
           protein Y39A1C.3 protein.
          Length = 294

 Score = 69.7 bits (163), Expect = 1e-12
 Identities = 39/78 (50%), Positives = 50/78 (64%), Gaps = 4/78 (5%)
 Frame = +3

Query: 189 VIAEKVSGTVKWFNVKSGYGFINRN---DTKEDVFVHQTAIARNNPRK-AVRSVGDGEAV 356
           VI   V G VKWF+V+  YGF+ R+   D  ED FVHQTAI +++  K  +R++ D E V
Sbjct: 84  VIETGVKGHVKWFSVRGRYGFVARDKPTDENEDFFVHQTAITKSSTIKFYLRTLDDDEPV 143

Query: 357 EFAVVAGEKGFEAAGVTG 410
            F +V G KG EAA VTG
Sbjct: 144 VFDIVEGLKGPEAANVTG 161


>Z81494-3|CAB61009.1|  196|Caenorhabditis elegans Hypothetical
           protein F02E9.2b protein.
          Length = 196

 Score = 52.4 bits (120), Expect = 2e-07
 Identities = 29/69 (42%), Positives = 41/69 (59%), Gaps = 2/69 (2%)
 Frame = +3

Query: 210 GTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVV--AGEK 383
           G+ KWFNV  GYGF+  + T ED+FVHQ+    N   +  RS+ +GE V + +   +  K
Sbjct: 24  GSCKWFNVSKGYGFVIDDITGEDLFVHQS----NLNMQGFRSLDEGERVSYYIQERSNGK 79

Query: 384 GFEAAGVTG 410
           G EA  V+G
Sbjct: 80  GREAYAVSG 88


>Z81494-2|CAB61008.1|  227|Caenorhabditis elegans Hypothetical
           protein F02E9.2a protein.
          Length = 227

 Score = 52.4 bits (120), Expect = 2e-07
 Identities = 29/69 (42%), Positives = 41/69 (59%), Gaps = 2/69 (2%)
 Frame = +3

Query: 210 GTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVV--AGEK 383
           G+ KWFNV  GYGF+  + T ED+FVHQ+    N   +  RS+ +GE V + +   +  K
Sbjct: 55  GSCKWFNVSKGYGFVIDDITGEDLFVHQS----NLNMQGFRSLDEGERVSYYIQERSNGK 110

Query: 384 GFEAAGVTG 410
           G EA  V+G
Sbjct: 111 GREAYAVSG 119


>U75915-1|AAB49759.1|  227|Caenorhabditis elegans Lin-28 protein.
          Length = 227

 Score = 52.4 bits (120), Expect = 2e-07
 Identities = 29/69 (42%), Positives = 41/69 (59%), Gaps = 2/69 (2%)
 Frame = +3

Query: 210 GTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVV--AGEK 383
           G+ KWFNV  GYGF+  + T ED+FVHQ+    N   +  RS+ +GE V + +   +  K
Sbjct: 55  GSCKWFNVSKGYGFVIDDITGEDLFVHQS----NLNMQGFRSLDEGERVSYYIQERSNGK 110

Query: 384 GFEAAGVTG 410
           G EA  V+G
Sbjct: 111 GREAYAVSG 119


>U75912-1|AAC47476.1|  227|Caenorhabditis elegans LIN-28 protein.
          Length = 227

 Score = 52.4 bits (120), Expect = 2e-07
 Identities = 29/69 (42%), Positives = 41/69 (59%), Gaps = 2/69 (2%)
 Frame = +3

Query: 210 GTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVV--AGEK 383
           G+ KWFNV  GYGF+  + T ED+FVHQ+    N   +  RS+ +GE V + +   +  K
Sbjct: 55  GSCKWFNVSKGYGFVIDDITGEDLFVHQS----NLNMQGFRSLDEGERVSYYIQERSNGK 110

Query: 384 GFEAAGVTG 410
           G EA  V+G
Sbjct: 111 GREAYAVSG 119


>Z81122-3|CAB54313.1| 1076|Caenorhabditis elegans Hypothetical
           protein T13F2.3b protein.
          Length = 1076

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = -1

Query: 440 GEPFTGSPPGPSNTSCFKAFLPGNHG 363
           G P   +PPGPS T+    F PG  G
Sbjct: 387 GTPHRFAPPGPSGTTSSPHFAPGAPG 412


>Z81122-2|CAB03354.1| 1074|Caenorhabditis elegans Hypothetical
           protein T13F2.3a protein.
          Length = 1074

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = -1

Query: 440 GEPFTGSPPGPSNTSCFKAFLPGNHG 363
           G P   +PPGPS T+    F PG  G
Sbjct: 385 GTPHRFAPPGPSGTTSSPHFAPGAPG 410


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,242,135
Number of Sequences: 27780
Number of extensions: 177207
Number of successful extensions: 562
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 519
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 556
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)