Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS330C03f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1539.06 |||acyl-coenzyme A binding protein |Schizosaccharomy...    94   1e-20
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        26   3.0  
SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|ch...    25   5.2  
SPAC27F1.10 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   5.2  
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||...    25   9.0  
SPAC22A12.10 |||diacylglycerol cholinephosphotranferase/ diacylg...    25   9.0  
SPCC191.01 ||SPCC417.13|sequence orphan|Schizosaccharomyces pomb...    25   9.0  

>SPBC1539.06 |||acyl-coenzyme A binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 87

 Score = 94.3 bits (224), Expect = 1e-20
 Identities = 47/88 (53%), Positives = 59/88 (67%)
 Frame = +3

Query: 39  LQEKFDQAAANVKNLKALPTDAQLLNLYAHFKQATVGDADPANRPGLLDLKGKAKFDAWH 218
           +   F+QAAA+VK LK  P   +LL LYA FKQATVGD +   +PGLLDLKGK K++AW 
Sbjct: 1   MSSTFEQAAADVKELKETPNSDELLKLYALFKQATVGDNN-TEKPGLLDLKGKFKWNAWE 59

Query: 219 KLAGTSKDDAQKAYIEIVEGLIASIGLK 302
           +L G SK+DA   YI  V+ L    G+K
Sbjct: 60  ELKGKSKEDAASEYISFVDELKTKYGMK 87


>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 22/81 (27%), Positives = 42/81 (51%), Gaps = 4/81 (4%)
 Frame = +3

Query: 51   FDQAAANVKNLKALPTDAQLLNLYAHFKQ--ATVGDADPANRPGLLD-LKGKAKFDAWHK 221
            F Q AA+++    +  DA LLN+Y +F+Q  + V +A    +  L + +K +    +W  
Sbjct: 3302 FSQHAASLRICHGI--DAMLLNIYHYFEQFLSKVSEAIHTQKQSLENSIKERILLMSWKD 3359

Query: 222  L-AGTSKDDAQKAYIEIVEGL 281
                  K+ A+K++ E+ + L
Sbjct: 3360 TNVYALKESAKKSHAELFKVL 3380


>SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 642

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = +3

Query: 432 HFCLKCFFFKNTNSY 476
           H+CLKCF  K   SY
Sbjct: 400 HYCLKCFQVKPPRSY 414


>SPAC27F1.10 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 101

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 11/44 (25%), Positives = 23/44 (52%), Gaps = 4/44 (9%)
 Frame = +3

Query: 357 VYYINTRAFSHHQRTSDF----FDAIFILHFCLKCFFFKNTNSY 476
           +Y+  T A S  ++   +    FD+ F+  + + CFF  + N++
Sbjct: 54  LYFKLTEAISFTEKCEKYNISLFDSTFVFGYIVNCFFIIHLNTF 97


>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 710

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +3

Query: 90  LPTDAQLLNLYAHFKQATV 146
           LP +   ++LY HFKQA V
Sbjct: 210 LPAEVTPIDLYNHFKQAGV 228


>SPAC22A12.10 |||diacylglycerol cholinephosphotranferase/
           diacylglycerol ethanolaminesphotranferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 386

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
 Frame = +3

Query: 360 YYINTRA-FSHHQRTSDFFDAIFILHFCLKCFFF 458
           Y++   A FS + +   FF+  F+  FCL  F F
Sbjct: 263 YFLQWMAVFSLYAKYPAFFEHHFLTIFCLNAFIF 296


>SPCC191.01 ||SPCC417.13|sequence orphan|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 178

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +3

Query: 54  DQAAANVKNLKALPTDAQLLNLYAHFKQATVGDAD 158
           DQ   NV++  + P   QL+ L+    +A V DAD
Sbjct: 40  DQFFRNVRDTISEPKFTQLMELWLEKSRAEVPDAD 74


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,079,384
Number of Sequences: 5004
Number of extensions: 40152
Number of successful extensions: 100
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 99
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)