Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS330C02f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6G10.08 |idp1||isocitrate dehydrogenase Idp1|Schizosaccharom...   223   1e-59
SPAC11G7.03 |idh1|glu3|isocitrate dehydrogenase |Schizosaccharom...    31   0.14 
SPBC336.12c |cdc10||MBF transcription factor complex subunit Cdc...    27   2.2  
SPAC869.05c |||sulfate transporter |Schizosaccharomyces pombe|ch...    26   3.9  
SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|c...    26   3.9  
SPAC3G6.11 |||ATP-dependent DNA helicase Chl1|Schizosaccharomyce...    25   6.8  
SPAC23C4.18c |rad4|cut5, dre3|BRCT domain protein Rad4|Schizosac...    25   9.0  
SPBC16C6.05 |||translation initiation factor |Schizosaccharomyce...    25   9.0  
SPACUNK4.08 |||dipeptidyl aminopeptidase |Schizosaccharomyces po...    25   9.0  
SPAC1783.03 |fta2|sma2|Sim4 and Mal2 associated |Schizosaccharom...    25   9.0  
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ...    25   9.0  
SPAC458.07 |tfa1|SPAPYUG7.01|transcription factor TFIIE alpha su...    25   9.0  

>SPAC6G10.08 |idp1||isocitrate dehydrogenase
           Idp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 418

 Score =  223 bits (545), Expect = 1e-59
 Identities = 99/145 (68%), Positives = 120/145 (82%)
 Frame = +1

Query: 85  PVVDILGDEMTRIIWDLIKEKLILPFLDIELHVYDLGMENRDKTDDQVTIDCAEAIKKYN 264
           PVV++ GDEMTR+IW +I+EKL+LP++DI+L  YDLG+E RDKT+DQ+T+D A+AI K +
Sbjct: 19  PVVEMDGDEMTRVIWKIIREKLVLPYMDIKLDYYDLGIEARDKTNDQITVDAAKAILKND 78

Query: 265 VGIKCATITPDEKRVEEFKLKKMWKSPNGTIRNILGGTVFREAIICKNIPRLVTGWDKPI 444
           VGIKCATITPDE RV+E+ LKKMWKSPNGTIRNIL GTVFRE I+ KNIP+ + GW  PI
Sbjct: 79  VGIKCATITPDEARVKEYNLKKMWKSPNGTIRNILNGTVFREPILIKNIPKYIPGWTNPI 138

Query: 445 IIGRHAHADQYKATDFVVPGAGTLE 519
            IGRHA  DQYK+TD V  G G LE
Sbjct: 139 CIGRHAFGDQYKSTDLVASGPGKLE 163


>SPAC11G7.03 |idh1|glu3|isocitrate dehydrogenase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 356

 Score = 30.7 bits (66), Expect = 0.14
 Identities = 20/70 (28%), Positives = 33/70 (47%), Gaps = 1/70 (1%)
 Frame = +1

Query: 97  ILGDEMTRIIWDLIKEKLILPFLDIELHVYDL-GMENRDKTDDQVTIDCAEAIKKYNVGI 273
           I GD + R   + + E      + IE    D+ GME  +K+      +  +++K+  VG+
Sbjct: 26  IPGDGIGRETSNAVTEIFKTANVPIEFEEIDVTGMEKNNKSSGDALHEAIQSLKRNKVGL 85

Query: 274 KCATITPDEK 303
           K    TP EK
Sbjct: 86  KGILFTPFEK 95


>SPBC336.12c |cdc10||MBF transcription factor complex subunit
           Cdc10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 767

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 16/48 (33%), Positives = 28/48 (58%)
 Frame = -3

Query: 498 DNKVSCFVLISMSMTSNDDGFVPPCYKSRYILANNSLPENSTTKNITD 355
           D+K +   L+S +++S +   VPP  KSR I+A+ +   +S  K+  D
Sbjct: 536 DSKQTKVSLMSENLSSKEKTAVPPRQKSRDIIASVTDVISSLDKDFQD 583


>SPAC869.05c |||sulfate transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 840

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -1

Query: 452 PMMMGLSHPVTSLGIFLQIIASLKTVP 372
           P +MG  + VT+   ++ II SLK +P
Sbjct: 253 PALMGYKNKVTAKATYMVIIQSLKHLP 279


>SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1687

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +1

Query: 145 KLILPFLDIELHVYDLGMENRDKTDDQVTIDCAEAIK 255
           +LI+ F D ELH +     N+   +     D AEA+K
Sbjct: 400 RLIMKFSDSELHTFLFHCVNKIVANTTENSDSAEAVK 436


>SPAC3G6.11 |||ATP-dependent DNA helicase Chl1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 844

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = -3

Query: 387 PENSTTKNITDGPIRAFPHFLQFKFFNSLLIRSYGRTFDAHI 262
           PEN TT  ++ GP      F   +  +  L++  GRTF   I
Sbjct: 598 PENITTILVSQGPAGVPFEFTHKRKDDENLLKDLGRTFQNFI 639


>SPAC23C4.18c |rad4|cut5, dre3|BRCT domain protein
           Rad4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 648

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = -3

Query: 447 DDGFVPPCYKSRYILANNSLPENSTTKN 364
           D  F+P  +K R  L N   PE S  +N
Sbjct: 95  DKHFLPTLFKCRVCLTNIGQPERSRIEN 122


>SPBC16C6.05 |||translation initiation factor |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 190

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 16/51 (31%), Positives = 23/51 (45%)
 Frame = +1

Query: 181 VYDLGMENRDKTDDQVTIDCAEAIKKYNVGIKCATITPDEKRVEEFKLKKM 333
           VYD     +D + D          K  N   + A +T +EKRVE  + K+M
Sbjct: 45  VYDKLYGEQDLSKDLENTLNVSGTKDSNAEEQPAKLTKEEKRVEREEAKRM 95


>SPACUNK4.08 |||dipeptidyl aminopeptidase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 793

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 11/30 (36%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
 Frame = +3

Query: 369 WWYCFQGGYYLQEY-TETCNRVGQTHHHWT 455
           W +     YYL    T+  N +GQ + HWT
Sbjct: 141 WRHSSFAQYYLYNTETKDVNMLGQDNEHWT 170


>SPAC1783.03 |fta2|sma2|Sim4 and Mal2 associated
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 351

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 2/63 (3%)
 Frame = -3

Query: 477 VLISMSMTSNDDGFVPPCYKSRYILANNSLPENSTTKNITDGPIRAFPHFLQFKFF--NS 304
           + I   +  +D GFV P Y   YIL N +    S T  + +   + F  F+    F   S
Sbjct: 279 ITILYEIKFDDLGFVQPNYCISYILKNQNEKIVSITSKLLNQLDKRFSEFVSLFGFREGS 338

Query: 303 LLI 295
           LL+
Sbjct: 339 LLL 341


>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 422

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 14/52 (26%), Positives = 24/52 (46%), Gaps = 2/52 (3%)
 Frame = -3

Query: 513 STSTWDNKVSCFVLISMSMTSNDD--GFVPPCYKSRYILANNSLPENSTTKN 364
           +T+  D   +   LI+  M   DD    +PP  K R +    +LP +  T++
Sbjct: 370 TTAAQDENATKAALIAQLMALTDDQINVLPPDQKERILQIRQALPSSYKTES 421


>SPAC458.07 |tfa1|SPAPYUG7.01|transcription factor TFIIE alpha
           subunit Tfa1 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 448

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -3

Query: 420 KSRYILANNSLPENSTTKNITDG 352
           +++ I  NNSLP   +T  ITDG
Sbjct: 394 RTKSIEENNSLPPIVSTNGITDG 416


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,244,627
Number of Sequences: 5004
Number of extensions: 47288
Number of successful extensions: 126
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)