Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS330C02f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68343-3|CAA92778.1|  412|Caenorhabditis elegans Hypothetical pr...   262   1e-70
Z81479-7|CAB03943.1|  435|Caenorhabditis elegans Hypothetical pr...   232   1e-61
U97196-1|AAK68667.2| 3279|Caenorhabditis elegans Hypothetical pr...    29   2.0  
Z82057-2|CAD89759.1|  561|Caenorhabditis elegans Hypothetical pr...    29   2.7  
X75331-1|CAA53080.1|  620|Caenorhabditis elegans acetylcholinest...    29   2.7  
U58731-1|AAB00593.1|  620|Caenorhabditis elegans Abnormal acetyl...    29   2.7  
U40417-9|AAA81417.2|  120|Caenorhabditis elegans Hypothetical pr...    29   2.7  
U56965-10|AAB52670.1| 1041|Caenorhabditis elegans Nicotinamide n...    27   8.1  

>Z68343-3|CAA92778.1|  412|Caenorhabditis elegans Hypothetical
           protein F59B8.2 protein.
          Length = 412

 Score =  262 bits (642), Expect = 1e-70
 Identities = 119/150 (79%), Positives = 132/150 (88%)
 Frame = +1

Query: 70  KIKAGPVVDILGDEMTRIIWDLIKEKLILPFLDIELHVYDLGMENRDKTDDQVTIDCAEA 249
           KI+ G +V++ GDEMTRIIWDLIKEKLILP++D+ +H +DLG+E+RD TDDQVTID A A
Sbjct: 5   KIQGGDIVEMQGDEMTRIIWDLIKEKLILPYVDLNVHFFDLGIEHRDATDDQVTIDAANA 64

Query: 250 IKKYNVGIKCATITPDEKRVEEFKLKKMWKSPNGTIRNILGGTVFREAIICKNIPRLVTG 429
             KYNV +KCATITPDE RVEEFKLKKMWKSPNGTIRNILGGTVFRE II KN+PRLV  
Sbjct: 65  TLKYNVAVKCATITPDEARVEEFKLKKMWKSPNGTIRNILGGTVFREPIIVKNVPRLVNT 124

Query: 430 WDKPIIIGRHAHADQYKATDFVVPGAGTLE 519
           W KPIIIGRHAHADQYKATDFVVPGAG LE
Sbjct: 125 WSKPIIIGRHAHADQYKATDFVVPGAGKLE 154


>Z81479-7|CAB03943.1|  435|Caenorhabditis elegans Hypothetical
           protein C34F6.8 protein.
          Length = 435

 Score =  232 bits (568), Expect = 1e-61
 Identities = 107/151 (70%), Positives = 124/151 (82%), Gaps = 1/151 (0%)
 Frame = +1

Query: 70  KIKA-GPVVDILGDEMTRIIWDLIKEKLILPFLDIELHVYDLGMENRDKTDDQVTIDCAE 246
           KIK   PVVD+ GDEMTRIIW  IK KLILP+LD+++  YDLG+E RD+T+DQVTID A 
Sbjct: 26  KIKVDNPVVDLDGDEMTRIIWKEIKNKLILPYLDLDIKYYDLGLEYRDETNDQVTIDAAH 85

Query: 247 AIKKYNVGIKCATITPDEKRVEEFKLKKMWKSPNGTIRNILGGTVFREAIICKNIPRLVT 426
           AI +++VGIKCATITPDE R++EF LKKMW SPNGTIRNILGGTVFRE I+CKNIPRLV 
Sbjct: 86  AILEHSVGIKCATITPDEARIKEFNLKKMWLSPNGTIRNILGGTVFREPILCKNIPRLVP 145

Query: 427 GWDKPIIIGRHAHADQYKATDFVVPGAGTLE 519
           GW +PI IGRHA  DQYK TD V+P   TL+
Sbjct: 146 GWTQPITIGRHAFGDQYKCTDLVIPSGSTLQ 176


>U97196-1|AAK68667.2| 3279|Caenorhabditis elegans Hypothetical protein
            B0207.5 protein.
          Length = 3279

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 19/70 (27%), Positives = 32/70 (45%)
 Frame = +1

Query: 157  PFLDIELHVYDLGMENRDKTDDQVTIDCAEAIKKYNVGIKCATITPDEKRVEEFKLKKMW 336
            P +D    V ++    R +   +  +      KK+    +  T+ PDE+ VE  KL K  
Sbjct: 2175 PDVDDSEDVEEIMRRPRKRIGPKEEVVLLSVTKKHPHSYRTKTV-PDEEPVEIVKLVKNR 2233

Query: 337  KSPNGTIRNI 366
            + PN T+R +
Sbjct: 2234 RLPNATLREV 2243


>Z82057-2|CAD89759.1|  561|Caenorhabditis elegans Hypothetical
           protein T26H8.4 protein.
          Length = 561

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 18/40 (45%), Positives = 24/40 (60%)
 Frame = -3

Query: 315 FFNSLLIRSYGRTFDAHIVFLYGLSTINCNLIISLITIFH 196
           F+NSL I S   TF    +F+   STI+ + +I LI IFH
Sbjct: 59  FYNSLSISS---TFP--FIFMTEFSTISTSFLILLIAIFH 93


>X75331-1|CAA53080.1|  620|Caenorhabditis elegans
           acetylcholinesterase protein.
          Length = 620

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 11/38 (28%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
 Frame = -2

Query: 253 LWPQHNQL*LDHQSYH-DFPYPSRRHVIQCPRKEESAF 143
           +WP++N + +++ +   +  YPS + +   PR++E AF
Sbjct: 523 VWPKYNSVSMEYMNMTVESSYPSMKRIGHGPRRKECAF 560


>U58731-1|AAB00593.1|  620|Caenorhabditis elegans Abnormal
           acetylcholinesterase protein1 protein.
          Length = 620

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 11/38 (28%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
 Frame = -2

Query: 253 LWPQHNQL*LDHQSYH-DFPYPSRRHVIQCPRKEESAF 143
           +WP++N + +++ +   +  YPS + +   PR++E AF
Sbjct: 523 VWPKYNSVSMEYMNMTVESSYPSMKRIGHGPRRKECAF 560


>U40417-9|AAA81417.2|  120|Caenorhabditis elegans Hypothetical
           protein T08A9.13 protein.
          Length = 120

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 11/45 (24%), Positives = 25/45 (55%)
 Frame = +1

Query: 196 MENRDKTDDQVTIDCAEAIKKYNVGIKCATITPDEKRVEEFKLKK 330
           ++   + + +  ++C +A+ +Y+V  K  T+T  E++  E   KK
Sbjct: 44  LQKAKELEQRTRVECQQALDQYDVLKKIPTLTEQERKENETLTKK 88


>U56965-10|AAB52670.1| 1041|Caenorhabditis elegans Nicotinamide
           nucleotide transhydrogenaseprotein 1 protein.
          Length = 1041

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 13/40 (32%), Positives = 23/40 (57%)
 Frame = +1

Query: 331 MWKSPNGTIRNILGGTVFREAIICKNIPRLVTGWDKPIII 450
           M+ +  GT  ++LGGTV   +++   +   + G D PI+I
Sbjct: 752 MYSTDFGTGMSMLGGTVGLSSLMGVTLTMAIGGADMPIVI 791


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,479,245
Number of Sequences: 27780
Number of extensions: 267027
Number of successful extensions: 734
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 715
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 734
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)