Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS330C01f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC428.01c |nup107|SPBC582.11c|nucleoporin Nup107|Schizosacchar...    27   1.7  
SPBC17G9.11c |pyr1||pyruvate carboxylase|Schizosaccharomyces pom...    27   2.2  
SPAC23H4.12 |alp13||Clr6 histone deacetylase complex subunit Alp...    26   3.0  
SPBC1773.08c |||mannosyltransferase complex subunit |Schizosacch...    25   5.2  
SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual    25   5.2  
SPAC2E1P5.04c |cwg2|orb7|geranylgeranyltransferase I beta subuni...    25   6.8  
SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor Sp...    25   9.0  

>SPBC428.01c |nup107|SPBC582.11c|nucleoporin
           Nup107|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 794

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +3

Query: 249 EPWYRSLFCNLQVILYTNSVQLIIRF 326
           EP Y+ L C L+ +L T+    ++RF
Sbjct: 559 EPSYKKLICTLEWLLITSQTDELLRF 584


>SPBC17G9.11c |pyr1||pyruvate carboxylase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1185

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 9/34 (26%), Positives = 22/34 (64%)
 Frame = +1

Query: 208 ILTVNYNSVVLRPTNHGTDHSFATYKLFSTLIQF 309
           ++T +Y+S++++ T H   + +   K+  +LI+F
Sbjct: 415 VITPHYDSMLVKCTCHDATYEYTRRKMIRSLIEF 448


>SPAC23H4.12 |alp13||Clr6 histone deacetylase complex subunit
           Alp13|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 337

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 13/26 (50%), Positives = 18/26 (69%)
 Frame = -2

Query: 103 YGIVERVE*NHGMMVKQAKIVNTVMK 26
           Y + ERV   HG ++ +AKIV+T MK
Sbjct: 5   YKVNERVLCFHGPLLYEAKIVDTEMK 30


>SPBC1773.08c |||mannosyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 391

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 11/27 (40%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
 Frame = +2

Query: 17  TLPFHHGIHNFS-LFYHHPVILLYPFH 94
           T  +HH    FS  FY HP++L Y ++
Sbjct: 140 TESYHHMCRFFSGFFYKHPLLLKYQWY 166


>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1828

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +3

Query: 453  DYVDGLLKLNLFNFRYLCEYIY 518
            DY+   LK+NL N R  CE I+
Sbjct: 1249 DYLRERLKINLQNVRLSCEIIF 1270


>SPAC2E1P5.04c |cwg2|orb7|geranylgeranyltransferase I beta subunit
           Cwg2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 355

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -1

Query: 383 TFCTLISWKLMLRSPP 336
           TFC L SW L+L+  P
Sbjct: 199 TFCALASWSLILKMIP 214


>SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor
            Spt6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1365

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 8/19 (42%), Positives = 15/19 (78%)
 Frame = +1

Query: 232  VVLRPTNHGTDHSFATYKL 288
            +V+RP++ G+DH   T+K+
Sbjct: 1190 LVIRPSSKGSDHIVVTWKV 1208


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,993,112
Number of Sequences: 5004
Number of extensions: 36712
Number of successful extensions: 89
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)