Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS330C01f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U53338-5|AAA96193.1|  463|Caenorhabditis elegans Hypothetical pr...    29   2.7  
Z81497-4|CAB04079.2|  458|Caenorhabditis elegans Hypothetical pr...    27   6.2  

>U53338-5|AAA96193.1|  463|Caenorhabditis elegans Hypothetical
           protein C05E11.7 protein.
          Length = 463

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = -2

Query: 283 CKLQKSDLYHGSLVAKLRCCSSQLICQLKLWLREQVT 173
           C+L  ++     +  K  C S  LIC ++ W+ EQ T
Sbjct: 127 CQLDDNEYGKQVISCKKECNSRGLICMMRTWISEQNT 163


>Z81497-4|CAB04079.2|  458|Caenorhabditis elegans Hypothetical
          protein F10C2.7 protein.
          Length = 458

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +3

Query: 6  PLQQRYRFITVFTILACFTII 68
          P++ R+R+I VF  LAC T I
Sbjct: 3  PVKHRFRYIVVFLGLACLTSI 23


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,009,340
Number of Sequences: 27780
Number of extensions: 205544
Number of successful extensions: 381
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 376
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 381
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)