Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS330B12f
(521 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC31E1.05 |gle1||RNA export factor Gle1 |Schizosaccharomyces p... 34 0.015
SPBC365.11 |||GRIP domain protein|Schizosaccharomyces pombe|chr ... 33 0.020
SPBC17D11.05 |tif32||translation initiation factor eIF3a|Schizos... 30 0.18
SPBC543.02c |||DNAJ/TPR domain protein DNAJC7 family|Schizosacch... 30 0.24
SPBC3E7.13c |||splicing factor, SYF2 family|Schizosaccharomyces ... 30 0.24
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 30 0.24
SPAC56F8.03 |||translation initiation factor IF2 |Schizosaccharo... 29 0.56
SPAC13F5.02c |ptr6|taf7|transcription factor TFIID complex subun... 29 0.56
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 29 0.56
SPCC364.04c |||CASP family protein|Schizosaccharomyces pombe|chr... 28 0.73
SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces pomb... 28 0.97
SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|ch... 28 0.97
SPCC737.07c |||DNA polymerase alpha-associated DNA helicase A |S... 27 1.3
SPBC11C11.03 |ndc80|ndc10, tid3|spindle pole body protein Ndc80|... 27 1.7
SPAC607.02c |||conserved fungal protein|Schizosaccharomyces pomb... 27 2.2
SPAC4F10.11 |spn1||septin Spn1|Schizosaccharomyces pombe|chr 1||... 27 2.2
SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces pom... 27 2.2
SPCC970.09 |sec8||exocyst complex subunit Sec8|Schizosaccharomyc... 26 3.0
SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharo... 26 3.0
SPAC4H3.14c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 26 3.0
SPAC7D4.04 |taf1||Taz1 interacting factor 1|Schizosaccharomyces ... 26 3.0
SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizo... 26 3.0
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc... 25 5.2
SPBC16D10.08c |||heat shock protein Hsp104 |Schizosaccharomyces ... 25 5.2
SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein Rad50|Schizos... 25 5.2
SPAC8F11.04 |||U3 snoRNP-associated protein Cic1/Utp30 family |S... 25 5.2
SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase Hrp1|Schizosac... 25 6.8
SPBC28F2.07 |sfr1|dds20, mug13|Swi five-dependent recombination ... 25 6.8
SPBC27.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||M... 25 6.8
SPCC417.06c |ppk35|mug27|serine/threonine protein kinase Ppk35|S... 25 6.8
SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|ch... 25 9.0
SPCC1840.04 |||caspase|Schizosaccharomyces pombe|chr 3|||Manual 25 9.0
>SPBC31E1.05 |gle1||RNA export factor Gle1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 480
Score = 33.9 bits (74), Expect = 0.015
Identities = 17/52 (32%), Positives = 35/52 (67%)
Frame = +3
Query: 3 KNMEAAERAKLEEEIRTKQEEVQRIQTEVELKDSETRRLQDEVEEARRKQDE 158
K+ E + +L E+ + ++E ++ I+ E + K++E RRL+ E +A+RK++E
Sbjct: 131 KDEEERRKKELMEKEKKEKERIRLIE-EQKHKENEQRRLKQEQIDAKRKEEE 181
Score = 24.6 bits (51), Expect = 9.0
Identities = 15/52 (28%), Positives = 27/52 (51%)
Frame = +3
Query: 3 KNMEAAERAKLEEEIRTKQEEVQRIQTEVELKDSETRRLQDEVEEARRKQDE 158
K +EA + +EE R K+E +++ + E E + E E+ R KQ++
Sbjct: 121 KRIEAERQRLKDEEERRKKELMEKEKKEKERIRLIEEQKHKENEQRRLKQEQ 172
>SPBC365.11 |||GRIP domain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 266
Score = 33.5 bits (73), Expect = 0.020
Identities = 16/41 (39%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
Frame = +3
Query: 318 LAEKNERLHNQLKALKQDLAQSRDETKE-TAMDKIHRENVR 437
L E+NE L + L+ + +L +SRDE KE K+ +E+V+
Sbjct: 142 LKEENENLQDMLRNVGNELVESRDEIKELIEKQKVQKESVK 182
>SPBC17D11.05 |tif32||translation initiation factor
eIF3a|Schizosaccharomyces pombe|chr 2|||Manual
Length = 932
Score = 30.3 bits (65), Expect = 0.18
Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Frame = +3
Query: 12 EAAERAKLEEEIRTKQEEVQRIQTEVELKDSETRRLQDE-VEEARRKQDE 158
E A++ +EE R +E +R Q E+ K RR+Q E EE RK E
Sbjct: 813 EEAQKRAIEERTRAAREAKEREQREMAEKLERQRRIQQERDEEISRKLAE 862
>SPBC543.02c |||DNAJ/TPR domain protein DNAJC7
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 476
Score = 29.9 bits (64), Expect = 0.24
Identities = 18/48 (37%), Positives = 29/48 (60%), Gaps = 6/48 (12%)
Frame = +3
Query: 24 RAKLEEEIRTKQEEVQRIQTEVELKDS------ETRRLQDEVEEARRK 149
RAK E + +E V+ +Q+ +EL S E RRLQ E+++++RK
Sbjct: 301 RAKAHEALEKWEEAVRDVQSAIELDASDANLRQELRRLQLELKKSKRK 348
>SPBC3E7.13c |||splicing factor, SYF2 family|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 229
Score = 29.9 bits (64), Expect = 0.24
Identities = 19/48 (39%), Positives = 26/48 (54%)
Frame = +3
Query: 15 AAERAKLEEEIRTKQEEVQRIQTEVELKDSETRRLQDEVEEARRKQDE 158
A ER +LE + +EE+ +I+TE E D E RR D E K D+
Sbjct: 45 ALER-RLERKRMEAEEELAKIETEEEGGDFERRRAWDWTIEESEKWDQ 91
>SPCC162.08c |nup211||nuclear pore complex associated
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1837
Score = 29.9 bits (64), Expect = 0.24
Identities = 29/172 (16%), Positives = 70/172 (40%), Gaps = 4/172 (2%)
Frame = +3
Query: 15 AAERAKLEEEIRTKQEEVQRIQTEVELKDSETRRL----QDEVEEARRKQDEXXXXXXXX 182
A E ++++ + EEV+ ++ EVE +++ RL ++ E ++
Sbjct: 1379 AKETDTFKQQVNSLNEEVENLKKEVEQANTKNTRLAAAWNEKCENLKKSSLTRFAHLKQE 1438
Query: 183 TTPQHHHVAXXXXXXXXXXXXXXXXXXXLHQAPDDLVDPVEARTTLAEKNERLHNQLKAL 362
T ++ + HQ + E T E+ E+L ++ +
Sbjct: 1439 LTNKNKELTSKNAENEAMQKEIESLKDSNHQLQESASSDAEQIT--KEQFEQLKSEKERT 1496
Query: 363 KQDLAQSRDETKETAMDKIHRENVRQGRDKYKTLREIRKGNTKRRVDQFENM 518
+++LA S++E + + + + + + K + E+R + + V Q +N+
Sbjct: 1497 EKELADSKNELEHLQSEAVDADGKTEISNLEKEIHELR-SDKEGLVQQVQNL 1547
>SPAC56F8.03 |||translation initiation factor IF2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1079
Score = 28.7 bits (61), Expect = 0.56
Identities = 17/56 (30%), Positives = 32/56 (57%), Gaps = 4/56 (7%)
Frame = +3
Query: 3 KNMEAAERAKLEEEIRTKQEEVQRIQTEVELKDSETRRLQD----EVEEARRKQDE 158
+ M +RA+ EEE R ++EE + + E L + E R ++ + E+ R+K++E
Sbjct: 251 QKMLEEKRAREEEEQRIREEEARIAEEEKRLAEVEEARKEEARLKKKEKERKKKEE 306
>SPAC13F5.02c |ptr6|taf7|transcription factor TFIID complex subunit
Taf7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 393
Score = 28.7 bits (61), Expect = 0.56
Identities = 20/70 (28%), Positives = 32/70 (45%)
Frame = +3
Query: 303 EARTTLAEKNERLHNQLKALKQDLAQSRDETKETAMDKIHRENVRQGRDKYKTLREIRKG 482
+ R + AE R + A +++ + +E +E D REN RQ R + + E+
Sbjct: 293 DTRESTAEP--RAAGEESASEEEEEEEEEEEEENEADDETRENKRQNRLVREFISELESS 350
Query: 483 NTKRRVDQFE 512
KRR D E
Sbjct: 351 IQKRRKDADE 360
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 28.7 bits (61), Expect = 0.56
Identities = 12/43 (27%), Positives = 24/43 (55%)
Frame = +3
Query: 3 KNMEAAERAKLEEEIRTKQEEVQRIQTEVELKDSETRRLQDEV 131
+N A +L ++++ E + +QTE+E K +E LQ ++
Sbjct: 1006 RNALLASNERLMDDLKNNGENIASLQTEIEKKRAENDDLQSKL 1048
Score = 24.6 bits (51), Expect = 9.0
Identities = 9/39 (23%), Positives = 21/39 (53%)
Frame = +3
Query: 27 AKLEEEIRTKQEEVQRIQTEVELKDSETRRLQDEVEEAR 143
+ E+E ++ + + Q + KD +++ ++EEAR
Sbjct: 395 SSFEQENKSLKGSIDEYQNNLSSKDKMVKQVSSQLEEAR 433
>SPCC364.04c |||CASP family protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 633
Score = 28.3 bits (60), Expect = 0.73
Identities = 35/157 (22%), Positives = 60/157 (38%), Gaps = 1/157 (0%)
Frame = +3
Query: 3 KNMEAAERAKLEEEIRTKQEEVQRIQTEVELKDSETRRLQDEVEEARRKQDEXXXXXXXX 182
K E+ + ++ EE R E I+ + E + L + +E R++ DE
Sbjct: 11 KLTESWKNSRFEELQREADEAAAEIEKMQKTSLDERKELSSKTKEFRKQPDEVKLGEMKG 70
Query: 183 TTPQHHH-VAXXXXXXXXXXXXXXXXXXXLHQAPDDLVDPVEARTTLAEKNERLHNQLKA 359
+ + L + PD +EA L K ++ LK
Sbjct: 71 LLKLYQSGIDSLTKRAKSAEATFFRVYETLGEVPDPYPLLIEAANNL--KTQKQIEDLKK 128
Query: 360 LKQDLAQSRDETKETAMDKIHRENVRQGRDKYKTLRE 470
K+++ S + KE ++ EN+R+ DKYK L E
Sbjct: 129 EKEEMEGSL-QGKEKLEREV--ENLRKELDKYKDLVE 162
>SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 952
Score = 27.9 bits (59), Expect = 0.97
Identities = 14/45 (31%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Frame = +3
Query: 6 NMEAAERAKL--EEEIRTKQEEVQRIQTEVELKDSETRRLQDEVE 134
N++ AE + EE++ Q + IQT+ ET +LQD+++
Sbjct: 295 NLKQAENKTISYEEKLSIAQNSINEIQTQNRDLKLETEKLQDQIK 339
>SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 750
Score = 27.9 bits (59), Expect = 0.97
Identities = 19/59 (32%), Positives = 28/59 (47%)
Frame = +3
Query: 294 DPVEARTTLAEKNERLHNQLKALKQDLAQSRDETKETAMDKIHRENVRQGRDKYKTLRE 470
+ V T+L E+N QLK ++DL +E T + K+ RE Q K + L E
Sbjct: 485 ETVNKLTSLQEQNNEFDRQLKEQEEDLQNKEEEL--TELRKLLREQT-QDSQKLRLLVE 540
>SPCC737.07c |||DNA polymerase alpha-associated DNA helicase A
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 660
Score = 27.5 bits (58), Expect = 1.3
Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Frame = +3
Query: 369 DLAQSRDETKETAMDKIHR-ENVRQGRDKYKTLREIRKGNTKRRVDQFENM 518
D+ + E + + KI + +N R+ R+ YK +RE+RK K N+
Sbjct: 309 DVIRGISEDIDVCLSKITKTKNGRERREIYKNIRELRKDYRKYEAKTVANI 359
>SPBC11C11.03 |ndc80|ndc10, tid3|spindle pole body protein
Ndc80|Schizosaccharomyces pombe|chr 2|||Manual
Length = 624
Score = 27.1 bits (57), Expect = 1.7
Identities = 11/33 (33%), Positives = 21/33 (63%)
Frame = +3
Query: 267 LHQAPDDLVDPVEARTTLAEKNERLHNQLKALK 365
L ++P++ E + T ++N+ L+NQ +ALK
Sbjct: 246 LDESPEESEPEKELKATFNQQNQDLYNQTEALK 278
>SPAC607.02c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 231
Score = 26.6 bits (56), Expect = 2.2
Identities = 16/61 (26%), Positives = 27/61 (44%)
Frame = +3
Query: 315 TLAEKNERLHNQLKALKQDLAQSRDETKETAMDKIHRENVRQGRDKYKTLREIRKGNTKR 494
T +K L + K + D A DE+ + K + ++Q +EI+KGN K
Sbjct: 3 TKTKKRSVLEAERKKIGLDHAPKEDESVDDNFPKQFKRLLQQKEYHESKKKEIKKGNLKN 62
Query: 495 R 497
+
Sbjct: 63 K 63
>SPAC4F10.11 |spn1||septin Spn1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 469
Score = 26.6 bits (56), Expect = 2.2
Identities = 13/49 (26%), Positives = 30/49 (61%)
Frame = +3
Query: 12 EAAERAKLEEEIRTKQEEVQRIQTEVELKDSETRRLQDEVEEARRKQDE 158
E AKLEEE +E++ ++ E E+K ++++Q++ + ++ ++E
Sbjct: 379 EVNPSAKLEEERALHEEKLMKM--EAEMKTIFSQKVQEKEDRLKQSENE 425
>SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 569
Score = 26.6 bits (56), Expect = 2.2
Identities = 13/55 (23%), Positives = 29/55 (52%)
Frame = +3
Query: 333 ERLHNQLKALKQDLAQSRDETKETAMDKIHRENVRQGRDKYKTLREIRKGNTKRR 497
E +N+ +K+D ++ TKE ++K E+ +Q +T+ E + G++ +
Sbjct: 306 ESAYNEELEMKKDTSKPTASTKEVVVEKKPDESRKQAARTLETVSEEQMGSSNAK 360
>SPCC970.09 |sec8||exocyst complex subunit Sec8|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1088
Score = 26.2 bits (55), Expect = 3.0
Identities = 17/74 (22%), Positives = 34/74 (45%), Gaps = 2/74 (2%)
Frame = +3
Query: 270 HQAPDDLVDPVEARTTLAEKNERLHNQLKALKQDLAQSRDETKETAMDKIHRENVRQGRD 449
H DD + A + E ++ ++++ ALKQ L S++ T ++ + R +
Sbjct: 109 HTHKDDFTRGISAYGEIMEGIQKCNSRIIALKQSLEASQECIGNTNSKELQQTLARSSQY 168
Query: 450 K--YKTLREIRKGN 485
K L+E+ + N
Sbjct: 169 KKVISVLKELNEAN 182
>SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1388
Score = 26.2 bits (55), Expect = 3.0
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +3
Query: 21 ERAKLEEEIRTKQEEVQRIQTEVELKDSETRR 116
ER K EEE R ++EE + ++ E+EL R
Sbjct: 935 EREKFEEEDRLREEE-EALKQEIELSSRRGNR 965
>SPAC4H3.14c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 345
Score = 26.2 bits (55), Expect = 3.0
Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Frame = +3
Query: 6 NMEAAERAKLEEEIRTKQEEVQR--IQTEVELKDSETRRLQDEVEEARR 146
N E + K +E + + EE++ ++ + +L D+E R LQD EE R
Sbjct: 173 NSETEQYEKQKEALEEEYEELRNECLKHDPQL-DAEIRTLQDTFEEVER 220
>SPAC7D4.04 |taf1||Taz1 interacting factor 1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 926
Score = 26.2 bits (55), Expect = 3.0
Identities = 11/35 (31%), Positives = 22/35 (62%)
Frame = +3
Query: 42 EIRTKQEEVQRIQTEVELKDSETRRLQDEVEEARR 146
E++ K+E++Q ++TE E + LQ+E+ R+
Sbjct: 581 ELQGKEEKIQYLETENEEVLQKYENLQEELSSTRK 615
>SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase
Ino80|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1604
Score = 26.2 bits (55), Expect = 3.0
Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
Frame = +3
Query: 12 EAAERAKLEEEIRTKQEEVQRIQ---TEVELKDSETRRLQDEVEE 137
EA +RAK EEE+R + + +++ T+ EL R D ++
Sbjct: 710 EALDRAKKEEELRESRRQARKLDFLITQTELYSHFVGRKMDREQD 754
>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1085
Score = 25.4 bits (53), Expect = 5.2
Identities = 15/43 (34%), Positives = 30/43 (69%), Gaps = 1/43 (2%)
Frame = +3
Query: 30 KLEEEIRTKQE-EVQRIQTEVELKDSETRRLQDEVEEARRKQD 155
++EEE + KQE E+++I+ E E K + ++L+ EE R++++
Sbjct: 575 EIEEENKRKQERELKKIR-EKEKKRDKKKQLKLAKEEERQRRE 616
>SPBC16D10.08c |||heat shock protein Hsp104 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 905
Score = 25.4 bits (53), Expect = 5.2
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = +3
Query: 300 VEARTTLAEKNERLHNQLKALKQDLAQSRDETK 398
VE R EK+E +LKA +++ Q +ET+
Sbjct: 428 VEIRALEREKDEASKERLKAARKEAEQVEEETR 460
Score = 25.0 bits (52), Expect = 6.8
Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Frame = +3
Query: 3 KNMEAAERAKL-EEEIRTKQEEVQRIQTEVELKDSETRRLQDEVEEARRKQDE 158
K+ + ER K +E +EE + I+ + EL+ S LQD A+R+ DE
Sbjct: 437 KDEASKERLKAARKEAEQVEEETRPIREKYELEKSRGSELQD----AKRRLDE 485
>SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein
Rad50|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1290
Score = 25.4 bits (53), Expect = 5.2
Identities = 16/50 (32%), Positives = 30/50 (60%), Gaps = 4/50 (8%)
Frame = +3
Query: 21 ERA-KLEEEIRTKQEEVQRIQTEVELKD---SETRRLQDEVEEARRKQDE 158
ERA K+E + + + I+++VE D +ET RLQDE+ ++ + ++
Sbjct: 216 ERAEKIELRVHESLKRISCIRSKVEELDQEITETARLQDELFKSTEEYEQ 265
Score = 25.0 bits (52), Expect = 6.8
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = +3
Query: 27 AKLEEEIRTKQEEVQRIQTEVELKDSETRRLQDEVEEARRK 149
+ LEEEIRT E + ++ +EL S DE+ R K
Sbjct: 787 SNLEEEIRTIDRETEVLR--IELPSSIAHHNLDEIYAEREK 825
>SPAC8F11.04 |||U3 snoRNP-associated protein Cic1/Utp30 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 373
Score = 25.4 bits (53), Expect = 5.2
Identities = 10/38 (26%), Positives = 23/38 (60%)
Frame = +3
Query: 15 AAERAKLEEEIRTKQEEVQRIQTEVELKDSETRRLQDE 128
A+ + K +EE Q++ ++++ E KDS+ + + D+
Sbjct: 273 ASSKRKSDEESLPSQKKQKKVEVAKESKDSKQQNVSDK 310
>SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase
Hrp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1373
Score = 25.0 bits (52), Expect = 6.8
Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 5/55 (9%)
Frame = +3
Query: 3 KNMEAAERAKLEEEIRTKQEEVQR-----IQTEVELKDSETRRLQDEVEEARRKQ 152
+ M AA+RAK EE R ++EE + +T S T+R Q E R K+
Sbjct: 958 ERMLAAQRAKEEERERREEEERENDEDHPSRTYKRTTKSITKRQQRREEMVREKE 1012
>SPBC28F2.07 |sfr1|dds20, mug13|Swi five-dependent recombination
repair protein Sfr1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 299
Score = 25.0 bits (52), Expect = 6.8
Identities = 15/42 (35%), Positives = 27/42 (64%), Gaps = 2/42 (4%)
Frame = +3
Query: 18 AERAKLEEEIRTKQEEVQRIQT--EVELKDSETRRLQDEVEE 137
+ R KLE+E+R QE++ +T +VE K +E + LQ +++
Sbjct: 184 SRRLKLEKEVRNLQEQLITAETARKVEAK-NEDKDLQTLIQK 224
>SPBC27.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1052
Score = 25.0 bits (52), Expect = 6.8
Identities = 17/49 (34%), Positives = 25/49 (51%)
Frame = +3
Query: 12 EAAERAKLEEEIRTKQEEVQRIQTEVELKDSETRRLQDEVEEARRKQDE 158
EA E + ++I E + EV+ ++S LQDEVEE R+ E
Sbjct: 882 EAEENIDISQDI--SMTETNAVDDEVQAENSI---LQDEVEETRQDDIE 925
>SPCC417.06c |ppk35|mug27|serine/threonine protein kinase
Ppk35|Schizosaccharomyces pombe|chr 3|||Manual
Length = 624
Score = 25.0 bits (52), Expect = 6.8
Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 3/44 (6%)
Frame = +3
Query: 342 HNQLKALKQDLAQS-RDETK--ETAMDKIHRENVRQGRDKYKTL 464
HN+ +DL + R +TK +T ++HR R+G+D Y+ L
Sbjct: 580 HNKGTTAIEDLDEDKRSKTKGHKTKSSRVHRLLERKGKDLYEFL 623
>SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1208
Score = 24.6 bits (51), Expect = 9.0
Identities = 7/39 (17%), Positives = 21/39 (53%)
Frame = +3
Query: 42 EIRTKQEEVQRIQTEVELKDSETRRLQDEVEEARRKQDE 158
+++ K+E + + KD++ RR + + + + ++ E
Sbjct: 574 KLKDKEETYNEVMNAFQYKDNDLRRFHESINKLQDREKE 612
>SPCC1840.04 |||caspase|Schizosaccharomyces pombe|chr 3|||Manual
Length = 425
Score = 24.6 bits (51), Expect = 9.0
Identities = 14/41 (34%), Positives = 15/41 (36%), Gaps = 3/41 (7%)
Frame = +2
Query: 347 PAQGAETRPRAVPRRN*RDG---HGQDPPRERPPGTRQVQD 460
P TRP P + H PPR PP TR D
Sbjct: 14 PPYNTYTRPNYSPNNGSQSNNTVHQYQPPRMPPPSTRPQTD 54
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,290,784
Number of Sequences: 5004
Number of extensions: 19165
Number of successful extensions: 165
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 163
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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