Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS330B12f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325077-1|ABD14091.1|  181|Apis mellifera complementary sex det...    27   0.088
DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex det...    27   0.088
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   1.4  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        23   1.9  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        23   1.9  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        23   1.9  
AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8 ...    22   3.3  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    22   4.4  
AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    21   5.8  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   7.7  

>DQ325077-1|ABD14091.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 27.5 bits (58), Expect = 0.088
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +1

Query: 37  KRKSALNKRKYNAYKPKSSSRTRRR 111
           ++KS  N+RKY  Y+ +S  R+R R
Sbjct: 46  EQKSYKNERKYRKYRERSKERSRDR 70


>DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex
           determiner protein.
          Length = 191

 Score = 27.5 bits (58), Expect = 0.088
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +1

Query: 37  KRKSALNKRKYNAYKPKSSSRTRRR 111
           ++KS  N+RKY  Y+ +S  R+R R
Sbjct: 46  EQKSYKNERKYRKYRERSKERSRDR 70


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.4 bits (48), Expect = 1.4
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = +3

Query: 312  TTLAEKNERLHNQLKALKQDLAQSRDETKETA 407
            +TL  K +  H  ++  K+D  QS D+TKET+
Sbjct: 1074 STLEYKVKERH-LMRPRKRDQKQSDDKTKETS 1104


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 7/34 (20%), Positives = 20/34 (58%)
 Frame = -2

Query: 520 YMFSNWSTRRLVLPLRISRSVLYLSRPWRTFSRW 419
           ++F +WS R  +L    ++ ++ +++ W  ++ W
Sbjct: 669 HLFGSWSNRPNLLFKDEAKDLVSVNKSWNKWNDW 702


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 7/34 (20%), Positives = 20/34 (58%)
 Frame = -2

Query: 520 YMFSNWSTRRLVLPLRISRSVLYLSRPWRTFSRW 419
           ++F +WS R  +L    ++ ++ +++ W  ++ W
Sbjct: 669 HLFGSWSNRPNLLFKDEAKDLVSVNKSWNKWNDW 702


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 7/34 (20%), Positives = 20/34 (58%)
 Frame = -2

Query: 520 YMFSNWSTRRLVLPLRISRSVLYLSRPWRTFSRW 419
           ++F +WS R  +L    ++ ++ +++ W  ++ W
Sbjct: 669 HLFGSWSNRPNLLFKDEAKDLVSVNKSWNKWNDW 702


>AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8
          protein.
          Length = 208

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 8/30 (26%), Positives = 16/30 (53%)
 Frame = +1

Query: 10 WKQQNVPS*KRKSALNKRKYNAYKPKSSSR 99
          W ++     KRK    KRK+   +P ++++
Sbjct: 8  WHKRRATGGKRKPIRKKRKFELGRPAANTK 37



 Score = 22.2 bits (45), Expect = 3.3
 Identities = 13/38 (34%), Positives = 17/38 (44%)
 Frame = +3

Query: 354 KALKQDLAQSRDETKETAMDKIHRENVRQGRDKYKTLR 467
           K  K +L +    TK     +IH    R G  KY+ LR
Sbjct: 23  KKRKFELGRPAANTK-LGPQRIHTVRTRGGNKKYRALR 59


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +3

Query: 276 APDDLVDPVEARTTLAE 326
           A +D+VDPVE   T  E
Sbjct: 163 AEEDIVDPVEENETYDE 179


>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = -3

Query: 429 SRGGSCPWP 403
           S GGSC WP
Sbjct: 137 STGGSCYWP 145


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 8/28 (28%), Positives = 12/28 (42%)
 Frame = +2

Query: 437  PGTRQVQDAPRDPQGQHQTSRRPVREHV 520
            PG   +        G  +  RRP+ EH+
Sbjct: 1307 PGNNLIATNTTVSSGSSEDHRRPLSEHI 1334


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 89,356
Number of Sequences: 438
Number of extensions: 1514
Number of successful extensions: 12
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)