Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS330B11f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1834.04 |hht1||histone H3 h3.1|Schizosaccharomyces pombe|chr...    50   2e-07
SPBC8D2.04 |hht2|h3.2|histone H3 h3.2|Schizosaccharomyces pombe|...    50   2e-07
SPBC1105.11c |hht3|h3.3|histone H3 h3.3|Schizosaccharomyces pomb...    50   2e-07
SPBC1105.17 |cnp1|sim2|CENP-A|Schizosaccharomyces pombe|chr 2|||...    46   5e-06
SPBC1773.05c |tms1||hexitol dehydrogenase |Schizosaccharomyces p...    25   9.0  

>SPAC1834.04 |hht1||histone H3 h3.1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 136

 Score = 50.0 bits (114), Expect = 2e-07
 Identities = 21/26 (80%), Positives = 24/26 (92%)
 Frame = -2

Query: 520 CAIHAKRVTIMPKDIQLARRIRGERA 443
           CAIH KRVTI PKD+QLARR+RGER+
Sbjct: 111 CAIHGKRVTIQPKDMQLARRLRGERS 136


>SPBC8D2.04 |hht2|h3.2|histone H3 h3.2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 136

 Score = 50.0 bits (114), Expect = 2e-07
 Identities = 21/26 (80%), Positives = 24/26 (92%)
 Frame = -2

Query: 520 CAIHAKRVTIMPKDIQLARRIRGERA 443
           CAIH KRVTI PKD+QLARR+RGER+
Sbjct: 111 CAIHGKRVTIQPKDMQLARRLRGERS 136


>SPBC1105.11c |hht3|h3.3|histone H3 h3.3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 136

 Score = 50.0 bits (114), Expect = 2e-07
 Identities = 21/26 (80%), Positives = 24/26 (92%)
 Frame = -2

Query: 520 CAIHAKRVTIMPKDIQLARRIRGERA 443
           CAIH KRVTI PKD+QLARR+RGER+
Sbjct: 111 CAIHGKRVTIQPKDMQLARRLRGERS 136


>SPBC1105.17 |cnp1|sim2|CENP-A|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 120

 Score = 45.6 bits (103), Expect = 5e-06
 Identities = 20/23 (86%), Positives = 22/23 (95%)
 Frame = -2

Query: 520 CAIHAKRVTIMPKDIQLARRIRG 452
           CAIHAKRVTIM +D+QLARRIRG
Sbjct: 97  CAIHAKRVTIMQRDMQLARRIRG 119


>SPBC1773.05c |tms1||hexitol dehydrogenase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 360

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 14/60 (23%), Positives = 29/60 (48%)
 Frame = +1

Query: 31  IRFI*HQILNYTL*ISSNTDYSHACVAWKYYLITTARHNLQSHLTQIRHPWAFSVTNEPY 210
           I F  + I+NY + +  +  Y+H C     +L++    +++  +T   H +AF    + Y
Sbjct: 284 IDFPINHIINYEINVLGSFRYAHGCYKQSLFLVSNGLVDVKPLIT---HRFAFKDALKAY 340


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,887,365
Number of Sequences: 5004
Number of extensions: 33782
Number of successful extensions: 81
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 81
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)