Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS330B10f
         (379 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC582.05c |brc1||BRCT domain protein Brc1|Schizosaccharomyces ...    28   0.56 
SPBC713.06 |adl1|lig3|DNA ligase |Schizosaccharomyces pombe|chr ...    26   2.3  
SPBC6B1.05c |||ubiquitin-like conjugating enzyme|Schizosaccharom...    25   5.2  
SPAC806.08c |mod21||gamma tubulin complex subunit Mod21|Schizosa...    24   9.1  
SPBC17D11.01 |nep1||nedd8 protease Nep1|Schizosaccharomyces pomb...    24   9.1  

>SPBC582.05c |brc1||BRCT domain protein Brc1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 878

 Score = 27.9 bits (59), Expect = 0.56
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = -1

Query: 265 FSRGCLRRWLCSFFTYTGTGWKCSNLID 182
           FS+G ++  +   FTY+G G KC  ++D
Sbjct: 139 FSKGLMKS-MTHLFTYSGMGAKCKKVLD 165


>SPBC713.06 |adl1|lig3|DNA ligase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 774

 Score = 25.8 bits (54), Expect = 2.3
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = +3

Query: 207 PVPVYVKKEHSHLLKHPLEKGKSEQNLKL 293
           P P+ +KK +S LLK     G   QN KL
Sbjct: 269 PEPLTIKKVYSTLLKIADSNGNGAQNRKL 297


>SPBC6B1.05c |||ubiquitin-like conjugating
           enzyme|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 649

 Score = 24.6 bits (51), Expect = 5.2
 Identities = 11/35 (31%), Positives = 22/35 (62%)
 Frame = -3

Query: 260 KRVLEKVAVLLLHVHRNGVEVFELDRLVRFGVFVF 156
           K++ E++  +LL+  +NGV     + L+RF +F +
Sbjct: 90  KKIREEIGEVLLNSIKNGVVSERPNELLRFLIFSY 124


>SPAC806.08c |mod21||gamma tubulin complex subunit
           Mod21|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 618

 Score = 23.8 bits (49), Expect = 9.1
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = +3

Query: 96  VEAKYDHQSLIGESGHHHQIEHEHAKSHQSIKFEHFH 206
           ++  +D QSL+GE  +  + + E  KS  S +F  F+
Sbjct: 431 LDLSFDFQSLMGEFENLIKQQEEAKKSLWSKRFSRFY 467


>SPBC17D11.01 |nep1||nedd8 protease Nep1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 420

 Score = 23.8 bits (49), Expect = 9.1
 Identities = 8/16 (50%), Positives = 8/16 (50%)
 Frame = +3

Query: 132 ESGHHHQIEHEHAKSH 179
           E  HHH   H H  SH
Sbjct: 297 EGHHHHHHHHHHHHSH 312


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,638,366
Number of Sequences: 5004
Number of extensions: 32993
Number of successful extensions: 98
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 122233080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)