Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS330B09f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_03_0194 + 13645418-13645790,13645879-13647653                       31   0.42 
02_05_1211 + 34956601-34956850,34956950-34957102,34957562-349576...    29   1.7  
07_01_1019 + 8714171-8714190,8714239-8714371,8714781-8714945,871...    28   4.0  
03_04_0088 + 17209568-17209876,17209966-17210595,17210846-172110...    28   4.0  

>01_03_0194 + 13645418-13645790,13645879-13647653
          Length = 715

 Score = 31.5 bits (68), Expect = 0.42
 Identities = 17/40 (42%), Positives = 22/40 (55%)
 Frame = -2

Query: 469 DKYKCLFQGYGCLLNICMCIIKILHLYPLSGTCNTSSLRT 350
           DKY  LF G  C+ N   C++    L P+ G  NTSS+ T
Sbjct: 79  DKYYNLFHGLECVDNRAFCLLLWAALLPMVG-MNTSSILT 117


>02_05_1211 +
           34956601-34956850,34956950-34957102,34957562-34957674,
           34958092-34958198,34958289-34958404,34958502-34958577,
           34958652-34958693,34958809-34958917,34959102-34959199,
           34959297-34959390,34959517-34959642
          Length = 427

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 16/41 (39%), Positives = 25/41 (60%)
 Frame = -1

Query: 143 VFIAADVTGVARVMSFTETDTHTHIEELNVKPNR*HQPAEF 21
           VF  +D +G+A  ++  ET  HT I+++ V P+R   PA F
Sbjct: 360 VFALSDGSGLAVTVARYETPAHTDIDKVGVIPDR-PLPASF 399


>07_01_1019 +
           8714171-8714190,8714239-8714371,8714781-8714945,
           8715810-8715890,8716223-8716318
          Length = 164

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 18/51 (35%), Positives = 22/51 (43%)
 Frame = -2

Query: 487 KGRYLYDKYKCLFQGYGCLLNICMCIIKILHLYPLSGTCNTSSLRTYHGTS 335
           K  Y+Y    C    +G L  I  C  KI  L   SG C+  + R   GTS
Sbjct: 5   KFSYIYRVTSCQRAFHGSLFRIKACA-KISELVAQSGWCSVLTCRLIQGTS 54


>03_04_0088 +
           17209568-17209876,17209966-17210595,17210846-17211019,
           17211434-17211515,17212091-17212278,17212993-17213152,
           17213441-17213763,17213860-17213967,17214116-17214189,
           17214249-17214361,17214461-17214741
          Length = 813

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -2

Query: 409 IKILHLYPLSGTCNTSSLRTYHGTS*RGV 323
           IK+LHL+PL+  C+      +HG   R V
Sbjct: 665 IKVLHLHPLTWACDLVDPSRWHGEEPRPV 693


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,218,438
Number of Sequences: 37544
Number of extensions: 210098
Number of successful extensions: 437
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 431
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 437
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)