Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS330B08f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC15A10.13 |ppk3||serine/threonine protein kinase Ppk3|Schizos...    69   3e-13
SPBP23A10.10 |ppk32||serine/threonine protein kinase Ppk32 |Schi...    44   2e-05
SPAC12B10.14c |ppk2||serine/threonine protein kinase Ppk2 |Schiz...    36   0.005
SPBC660.14 |mik1||mitotic inhibitor kinase Mik1|Schizosaccharomy...    35   0.006
SPBC21.06c |cdc7|pld1, its10|serine/threonine protein kinase Cdc...    34   0.015
SPAC2C4.14c |ppk11||PAK-related kinase Ppk11|Schizosaccharomyces...    31   0.10 
SPAC644.06c |cdr1|nim1|GIN4 family protein kinase Cdr1|Schizosac...    31   0.14 
SPAC2F3.15 |lsk1||latrunculin sensitive kinase Lsk1 |Schizosacch...    29   0.56 
SPAPB8E5.07c |||ribosome biogenesis protein Rrp12|Schizosaccharo...    27   2.2  
SPAC222.07c |hri2||eIF2 alpha kinase Hri2|Schizosaccharomyces po...    27   2.2  
SPBC16A3.11 |eso1||sister chromatid cohesion protein Eso1|Schizo...    25   5.2  
SPCC550.10 |meu8||betaine aldehyde dehydrogenase |Schizosaccharo...    25   9.0  
SPAC7D4.04 |taf1||Taz1 interacting factor 1|Schizosaccharomyces ...    25   9.0  
SPCC320.13c |ark1|aim1, SPCC330.16|aurora-B kinase Ark1|Schizosa...    25   9.0  

>SPAC15A10.13 |ppk3||serine/threonine protein kinase
           Ppk3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 637

 Score = 69.3 bits (162), Expect = 3e-13
 Identities = 37/110 (33%), Positives = 61/110 (55%)
 Frame = +3

Query: 111 SVFKGEAAAGPLWAVSTPLEKFCNNLLKYRHPCIVRYISAWQQRSTLHLATEYVLPLSHV 290
           SVF    +  P WA     ++ C  +   RHPCI++Y+S ++  + L++ATE V P++  
Sbjct: 49  SVFSISLSTHPEWAELA--DRACETMKTLRHPCIIKYLSTYKSSTHLYIATETVRPVTTE 106

Query: 291 LKTLSPLQICIGLNNILRALVFLHDQASMSHNNVSTSAVYVTGDGQWKLG 440
           L  LS      GL  +  AL FL+D+ ++ H N+  S+VY+    +W +G
Sbjct: 107 LNELSAEIKTYGLWRVSAALSFLNDK-NIVHGNLQMSSVYLNSADEWIIG 155


>SPBP23A10.10 |ppk32||serine/threonine protein kinase Ppk32
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 749

 Score = 43.6 bits (98), Expect = 2e-05
 Identities = 21/51 (41%), Positives = 28/51 (54%)
 Frame = +3

Query: 300 LSPLQICIGLNNILRALVFLHDQASMSHNNVSTSAVYVTGDGQWKLGGLQY 452
           L  ++I  GL  I+  LVFLH  A + H N+  S+V V   G WKL G  +
Sbjct: 145 LEEVEIQKGLLQIIDGLVFLHGSAKVIHYNIRPSSVVVDAKGDWKLCGFSF 195


>SPAC12B10.14c |ppk2||serine/threonine protein kinase Ppk2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 665

 Score = 35.5 bits (78), Expect = 0.005
 Identities = 26/96 (27%), Positives = 44/96 (45%), Gaps = 6/96 (6%)
 Frame = +3

Query: 201 HPCIVRYISAWQQRSTLHLATEYVLPLSHVLKTLSPLQICIGLN------NILRALVFLH 362
           H  ++RY  ++   + +    EY  P S  L  L P      LN       I   L FLH
Sbjct: 442 HKNLIRYNESFWYLNNIWSVFEYKDP-STKLSALIPKYFFSELNIASICYEISSGLAFLH 500

Query: 363 DQASMSHNNVSTSAVYVTGDGQWKLGGLQYLCPFSE 470
           + + ++H+N++T  +Y+T     K+G   +  P+ E
Sbjct: 501 N-SGIAHHNLTTECIYLTKSSCLKIGNYAFSSPYIE 535


>SPBC660.14 |mik1||mitotic inhibitor kinase Mik1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 581

 Score = 35.1 bits (77), Expect = 0.006
 Identities = 29/100 (29%), Positives = 45/100 (45%), Gaps = 10/100 (10%)
 Frame = +3

Query: 204 PCIVRYISAWQQRSTLHLATEYV------LPLSHV--LKTLSPLQICIGLNNILRALVFL 359
           P +V  ++ W     + L  +Y       L LS +  L+ + P ++   L  + +AL F+
Sbjct: 349 PFVVNLVNVWSYNDNIFLQLDYCENGDLSLFLSELGLLQVMDPFRVWKMLFQLTQALNFI 408

Query: 360 HDQASMSHNNVSTSAVYVTGDGQWKLG--GLQYLCPFSEL 473
           H      H +V  S V +T DG  KLG  GL    P S +
Sbjct: 409 H-LLEFVHLDVKPSNVLITRDGNLKLGDFGLATSLPVSSM 447


>SPBC21.06c |cdc7|pld1, its10|serine/threonine protein kinase
           Cdc7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1062

 Score = 33.9 bits (74), Expect = 0.015
 Identities = 22/84 (26%), Positives = 41/84 (48%), Gaps = 5/84 (5%)
 Frame = +3

Query: 201 HPCIVRYISAWQQRSTLHLATEYVL--PLSHVLKTLSPLQ---ICIGLNNILRALVFLHD 365
           HP IV+Y  ++Q   +L +  EY     L  + K    +    + +    +L+ L++LH+
Sbjct: 65  HPNIVKYRGSYQTNDSLCIILEYCENGSLRSICKNFGKIPENLVALYTFQVLQGLLYLHN 124

Query: 366 QASMSHNNVSTSAVYVTGDGQWKL 437
           Q  + H ++  + +  T DG  KL
Sbjct: 125 Q-GVIHRDIKGANILTTKDGTIKL 147


>SPAC2C4.14c |ppk11||PAK-related kinase Ppk11|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 312

 Score = 31.1 bits (67), Expect = 0.10
 Identities = 25/91 (27%), Positives = 39/91 (42%), Gaps = 5/91 (5%)
 Frame = +3

Query: 180 NNLLKYRHPCIVRYISAWQQRSTLHLATEYV-----LPLSHVLKTLSPLQICIGLNNILR 344
           N L+      I +Y +++     L +  EY      L L  +  T S   I   +  +L 
Sbjct: 54  NFLIDLNSVHITKYYASFVDGFRLWITMEYCDGGSCLDLLKLSGTFSERVIAEVMRQVLE 113

Query: 345 ALVFLHDQASMSHNNVSTSAVYVTGDGQWKL 437
           ALV+LH Q  M H ++  + +    DG  KL
Sbjct: 114 ALVYLHGQGKM-HRDIKAANILTMKDGLVKL 143


>SPAC644.06c |cdr1|nim1|GIN4 family protein kinase
           Cdr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 593

 Score = 30.7 bits (66), Expect = 0.14
 Identities = 25/79 (31%), Positives = 35/79 (44%), Gaps = 5/79 (6%)
 Frame = +3

Query: 141 PLWAVSTPLEKFCNNLLKYRHPCIVRYISAWQQRSTLHLATEYVL--PLSHVLKTLSPL- 311
           P+   S  +E     LL  RHP I+R    W     ++LA EYV    L H ++   PL 
Sbjct: 44  PIRYASIGMEILMMRLL--RHPNILRLYDVWTDHQHMYLALEYVPDGELFHYIRKHGPLS 101

Query: 312 --QICIGLNNILRALVFLH 362
             +    L+ IL A+   H
Sbjct: 102 EREAAHYLSQILDAVAHCH 120


>SPAC2F3.15 |lsk1||latrunculin sensitive kinase Lsk1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 593

 Score = 28.7 bits (61), Expect = 0.56
 Identities = 23/88 (26%), Positives = 42/88 (47%), Gaps = 5/88 (5%)
 Frame = +3

Query: 186 LLKYRHPCIVRYISAWQQRSTLHLATEYV-LPLSHVLKT----LSPLQICIGLNNILRAL 350
           L + RH  IVR +    ++S++++  EY+   L+ VL       +P  I      I  AL
Sbjct: 328 LQRLRHKNIVRLLEIMVEKSSVYMVFEYMDHDLTGVLLNSQLHFTPGNIKHLSKQIFEAL 387

Query: 351 VFLHDQASMSHNNVSTSAVYVTGDGQWK 434
            +LH +  + H ++  S + +  +G  K
Sbjct: 388 AYLHHRGVL-HRDIKGSNILLNNNGDLK 414


>SPAPB8E5.07c |||ribosome biogenesis protein
           Rrp12|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1163

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = +3

Query: 333 NILRALVFLHDQASMSHNNVSTSAVYV 413
           N+L  L+ L D +S +H N   +++Y+
Sbjct: 118 NVLEKLLLLQDYSSWTHGNSCKTSIYI 144


>SPAC222.07c |hri2||eIF2 alpha kinase Hri2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 639

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +3

Query: 186 LLKYRHPCIVRYISAWQQRST 248
           L K  HP ++RY S+W + +T
Sbjct: 221 LAKMDHPNVIRYFSSWVESTT 241


>SPBC16A3.11 |eso1||sister chromatid cohesion protein
           Eso1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 872

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 11/36 (30%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
 Frame = +3

Query: 318 CIGLNNILR-ALVFLHDQASMSHNNVSTSAVYVTGD 422
           C+GL    R +  ++ D+  +++NN ++SAVY+  +
Sbjct: 755 CVGLLLAERISSAYIVDELELNNNNSTSSAVYIKNE 790


>SPCC550.10 |meu8||betaine aldehyde dehydrogenase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 500

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +3

Query: 240 RSTLHLATEYVLPLSHVLKTLSPLQIC 320
           +  +H A E ++PL+  L   SPL IC
Sbjct: 255 KKIMHAAAENIVPLTLELGGKSPLIIC 281


>SPAC7D4.04 |taf1||Taz1 interacting factor 1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 926

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +3

Query: 327 LNNILRALVFLHDQASMSHNNVSTSAV 407
           L++IL +   +H+Q S+ H+  STS V
Sbjct: 119 LSDILESSSKIHNQLSVCHDEYSTSIV 145


>SPCC320.13c |ark1|aim1, SPCC330.16|aurora-B kinase
           Ark1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 355

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = +3

Query: 198 RHPCIVRYISAWQQRST 248
           RHP IV+Y  +W ++S+
Sbjct: 336 RHPWIVKYKDSWTRKSS 352


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,240,523
Number of Sequences: 5004
Number of extensions: 46255
Number of successful extensions: 147
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)