Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS330B07f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1450.13c |||riboflavin synthase |Schizosaccharomyces pombe|c...    27   1.7  
SPAC23E2.03c |ste7||meiotic suppressor protein Ste7|Schizosaccha...    25   6.8  
SPBC776.04 |sec2302|sec23-b|GTPase activating protein Sec23b |Sc...    25   6.8  
SPAC4F10.06 |||BUD22 family protein|Schizosaccharomyces pombe|ch...    25   9.0  

>SPCC1450.13c |||riboflavin synthase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 208

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 15/56 (26%), Positives = 31/56 (55%), Gaps = 4/56 (7%)
 Frame = +3

Query: 240 NNSDKAILTITYCAHKTVSYRKKITSLLNIELHVI*KCQFKI----IFSWMRVSQS 395
           ++S  +I+ I+Y   K +  +K +  L+N+E+  I K   K+    I  W++ +Q+
Sbjct: 153 DDSTFSIMMISYTQSKVIMAKKNVGDLVNVEVDQIGKYTEKLVEAHIADWIKKTQA 208


>SPAC23E2.03c |ste7||meiotic suppressor protein
           Ste7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 569

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +3

Query: 219 SISS*PCNNSDKAILTITYCAHKTVSYR 302
           S SS PC+ S+ +++ I Y    T+S R
Sbjct: 104 SASSLPCSKSNDSMVNICYMLKATISKR 131


>SPBC776.04 |sec2302|sec23-b|GTPase activating protein Sec23b
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 765

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 5/54 (9%)
 Frame = +3

Query: 174 KKSNIKPSNSFAQVFSISS*PCN-NSDKA----ILTITYCAHKTVSYRKKITSL 320
           K + I P +S+A  F +     N NS +     I  +TY  H + +YR ++T++
Sbjct: 447 KMAAISPKSSYALYFDLGKEMGNPNSQRPTQAFIQFLTYYQHSSGTYRLRVTTI 500


>SPAC4F10.06 |||BUD22 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 388

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = +3

Query: 267 ITYCAHKTVSYRKKITSLLNIELHV 341
           + YC +K +   K    LLN  LHV
Sbjct: 84  VDYCYYKKILKNKDFRKLLNENLHV 108


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,026,186
Number of Sequences: 5004
Number of extensions: 38893
Number of successful extensions: 68
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 68
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)