Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS330B07f
         (521 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY060438-1|AAL25477.1|  906|Drosophila melanogaster LD46618p pro...    34   0.10 
AF237761-2|AAF81411.1|  908|Drosophila melanogaster unknown prot...    31   0.72 
M22874-2|AAA28675.1|  916|Drosophila melanogaster protein ( D.me...    29   2.9  
AY089343-1|AAL90081.2|  718|Drosophila melanogaster AT16518p pro...    29   2.9  
AE014297-4681|AAS65233.2|  179|Drosophila melanogaster CG33483-P...    28   6.7  

>AY060438-1|AAL25477.1|  906|Drosophila melanogaster LD46618p
           protein.
          Length = 906

 Score = 34.3 bits (75), Expect = 0.10
 Identities = 15/34 (44%), Positives = 23/34 (67%)
 Frame = +3

Query: 417 SQS*DLGVTLDRRMTFGSHIKSVRDRAVFLLSRL 518
           SQ+  LG+TLD+R+TFG H+K+   R    + +L
Sbjct: 749 SQAKYLGITLDKRLTFGPHLKATTRRCYQRMQQL 782


>AF237761-2|AAF81411.1|  908|Drosophila melanogaster unknown
           protein.
          Length = 908

 Score = 31.5 bits (68), Expect = 0.72
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = +3

Query: 432 LGVTLDRRMTFGSHIKSVRDR 494
           LGV LDRR+TF  H+  +R R
Sbjct: 748 LGVLLDRRLTFSKHVTDIRTR 768


>M22874-2|AAA28675.1|  916|Drosophila melanogaster protein (
           D.melanogaster LINEelement J-1, clone J-1. ).
          Length = 916

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 10/19 (52%), Positives = 16/19 (84%)
 Frame = +3

Query: 432 LGVTLDRRMTFGSHIKSVR 488
           LG+TLDR++TF  HI +++
Sbjct: 753 LGITLDRKLTFSRHITNIQ 771


>AY089343-1|AAL90081.2|  718|Drosophila melanogaster AT16518p
           protein.
          Length = 718

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 10/19 (52%), Positives = 16/19 (84%)
 Frame = +3

Query: 432 LGVTLDRRMTFGSHIKSVR 488
           LG+TLDR++TF  HI +++
Sbjct: 555 LGITLDRKLTFSRHITNIQ 573


>AE014297-4681|AAS65233.2|  179|Drosophila melanogaster CG33483-PA
           protein.
          Length = 179

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 18/64 (28%), Positives = 30/64 (46%)
 Frame = +3

Query: 207 AQVFSISS*PCNNSDKAILTITYCAHKTVSYRKKITSLLNIELHVI*KCQFKIIFSWMRV 386
           A +   ++  C + DKA     YC  K+V+   K  S L + LH +   + K+ FS ++ 
Sbjct: 22  ASLVEFTNIKCTSWDKAFDDFEYCHLKSVNRSFKYLS-LKVNLHKVPITKVKVNFSLLKR 80

Query: 387 SQSY 398
              Y
Sbjct: 81  FNGY 84


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,850,484
Number of Sequences: 53049
Number of extensions: 382029
Number of successful extensions: 634
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 627
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 634
length of database: 24,988,368
effective HSP length: 80
effective length of database: 20,744,448
effective search space used: 1929233664
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)