Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS330B06f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1223.07c |||aspartate-tRNA ligase |Schizosaccharomyces pombe...    26   3.9  
SPAC30D11.11 |||Haemolysin-III family protein|Schizosaccharomyce...    25   5.2  
SPAC977.03 |||methyltransferase |Schizosaccharomyces pombe|chr 1...    25   5.2  
SPAC750.03c |||methyltransferase |Schizosaccharomyces pombe|chr ...    25   6.8  
SPBC1348.04 |||methyltransferase |Schizosaccharomyces pombe|chr ...    25   6.8  
SPAC1952.01 ||SPAC1B3.19|Pig-U|Schizosaccharomyces pombe|chr 1||...    25   9.0  
SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase Abc...    25   9.0  

>SPCC1223.07c |||aspartate-tRNA ligase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 580

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 15/34 (44%), Positives = 23/34 (67%), Gaps = 1/34 (2%)
 Frame = -2

Query: 415 LSLQTI*CPSDIVR-NPQISISSLISDAEIKISS 317
           +SL++I     IV+ +P+I  S+ + DAEI ISS
Sbjct: 157 ISLESIVLVEGIVKKSPEIIKSATVQDAEIHISS 190


>SPAC30D11.11 |||Haemolysin-III family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 442

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +1

Query: 55  LIK*YF*WKKIFNQFEYFFINVF 123
           LI  Y  WKK FN+++Y  + +F
Sbjct: 321 LIGIYTPWKKWFNEYKYRSVKIF 343


>SPAC977.03 |||methyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 145

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = -3

Query: 324 FHLVSNQQHDPSLQSEIHIC 265
           FH + N  H+P   S  HIC
Sbjct: 84  FHSILNSDHEPHTASLSHIC 103


>SPAC750.03c |||methyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 145

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = -3

Query: 324 FHLVSNQQHDPSLQSEIHIC 265
           FH + N  H+P   S  HIC
Sbjct: 84  FHSILNSDHEPYTASLSHIC 103


>SPBC1348.04 |||methyltransferase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 145

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = -3

Query: 324 FHLVSNQQHDPSLQSEIHIC 265
           FH + N  H+P   S  HIC
Sbjct: 84  FHSILNSDHEPYTASLSHIC 103


>SPAC1952.01 ||SPAC1B3.19|Pig-U|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 408

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 13/24 (54%), Positives = 18/24 (75%)
 Frame = +1

Query: 67  YF*WKKIFNQFEYFFINVFA*ILP 138
           YF + ++FN+F  FF+ VFA ILP
Sbjct: 254 YF-FTEMFNEFRTFFLFVFA-ILP 275


>SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase
            Abc2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1463

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 22/83 (26%), Positives = 33/83 (39%), Gaps = 7/83 (8%)
 Frame = +3

Query: 105  FFYKCICVNFTLKPCNLISIMGL-----CVFFICNYLNRQLILPAESTRAPLVTLWT--L 263
            +FY  I   F L  C LIS+  L     C    C YL+  ++      RAP+    T   
Sbjct: 941  YFYLGIYTLFGLLSCALISLSSLTITVFCAIKSCRYLHDSMVKAV--LRAPMSFFETTPT 998

Query: 264  NKYEFHFEGKGHAVDSIRDEIFI 332
             +    F    + VD +   +F+
Sbjct: 999  GRILNRFSSDVYRVDEVISRVFM 1021


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,974,555
Number of Sequences: 5004
Number of extensions: 38545
Number of successful extensions: 78
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 78
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)