Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS330B06f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_04_0310 + 20114415-20117819                                         29   1.7  
12_02_0898 - 24121494-24122120,24122247-24122594,24122984-24123424     29   3.0  
05_06_0118 + 25735966-25737601,25737698-25738488                       27   6.9  
12_01_0254 + 1885412-1885683,1886123-1886389,1886501-1887077           27   9.1  

>05_04_0310 + 20114415-20117819
          Length = 1134

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 17/62 (27%), Positives = 34/62 (54%), Gaps = 7/62 (11%)
 Frame = -2

Query: 463  DWRRNALRYESVYPKKLSLQTI*CPSDIVRNP-------QISISSLISDAEIKISSRIES 305
            +W +   +Y+SV+P+   L+ + CP D+++ P       ++SI +    + +K+SS   S
Sbjct: 868  EWTKEEEKYDSVFPRLRKLKLLSCP-DLIKVPPFPQSVRKVSIENTGFVSHLKLSSSSSS 926

Query: 304  TA 299
             A
Sbjct: 927  KA 928


>12_02_0898 - 24121494-24122120,24122247-24122594,24122984-24123424
          Length = 471

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 17/55 (30%), Positives = 23/55 (41%)
 Frame = -2

Query: 370 PQISISSLISDAEIKISSRIESTA*PFPSK*NSYLFSVHSVTSGALVDSAGNISW 206
           P +SI   I   +IK  S  E+   P   K    L   HS    AL  +  N++W
Sbjct: 408 PGLSIDCFIPPTDIKSGSISETVELPHGEKSKVGLLQCHSAKVAALEKADDNVAW 462


>05_06_0118 + 25735966-25737601,25737698-25738488
          Length = 808

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +3

Query: 282 FEGKGHAVDSIRDEIFISASEMSD 353
           F GK H + S++ EIFI   E  D
Sbjct: 194 FRGKSHEIHSVKCEIFILGGEEGD 217


>12_01_0254 + 1885412-1885683,1886123-1886389,1886501-1887077
          Length = 371

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +3

Query: 195 YLNRQLILPAESTRAPLVTLWTLNKYEF 278
           YL  +++ P E+   PLV  WT + + F
Sbjct: 128 YLGLRVVSPGENVSRPLVPKWTESPFSF 155


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,501,239
Number of Sequences: 37544
Number of extensions: 204817
Number of successful extensions: 309
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 307
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 309
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)