Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS330B06f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL110477-11|CAB54323.1|  489|Caenorhabditis elegans Hypothetical...    28   4.7  
AC024859-4|AAK29983.4|  472|Caenorhabditis elegans Hypothetical ...    28   4.7  
Z92812-2|CAB07277.1|  213|Caenorhabditis elegans Hypothetical pr...    27   6.2  
U10438-3|AAA19082.2|  242|Caenorhabditis elegans Drosophila odd-...    27   6.2  
AL031620-4|CAA20925.1|  456|Caenorhabditis elegans Hypothetical ...    27   6.2  
AL032655-7|CAH60798.1|  329|Caenorhabditis elegans Hypothetical ...    27   8.1  

>AL110477-11|CAB54323.1|  489|Caenorhabditis elegans Hypothetical
           protein Y113G7B.16 protein.
          Length = 489

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = +3

Query: 270 YEFHFEGKGHAVDSIRDEIFISASEMSDEIDICGFRTISDG 392
           YE+ +  K   V+    E+ ++A+E SDEID  G   I  G
Sbjct: 241 YEWKYNQKPDKVEKPNFEMLLTAAEDSDEIDFGGGDEIDFG 281


>AC024859-4|AAK29983.4|  472|Caenorhabditis elegans Hypothetical
           protein Y71H2AM.11 protein.
          Length = 472

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
 Frame = +3

Query: 75  MEKNI*SI*IFFYKCICVNFTL---KPCNLISIMGLCVFFI 188
           +E NI  I    + CI  N+ L   KPC    + G+C +F+
Sbjct: 177 LEDNIDKISDVTFSCISDNYWLGRNKPCLTYGLRGICYYFV 217


>Z92812-2|CAB07277.1|  213|Caenorhabditis elegans Hypothetical
           protein T03E6.2 protein.
          Length = 213

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 13/19 (68%), Positives = 13/19 (68%)
 Frame = +3

Query: 162 IMGLCVFFICNYLNRQLIL 218
           IMGLC   I  YLNRQL L
Sbjct: 92  IMGLCFSTISLYLNRQLFL 110


>U10438-3|AAA19082.2|  242|Caenorhabditis elegans Drosophila
           odd-skipped-like protein1 protein.
          Length = 242

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 20/66 (30%), Positives = 28/66 (42%), Gaps = 3/66 (4%)
 Frame = +3

Query: 183 FICNYLNRQLILPAESTRAPLVTLWTLNKYEFHFEGKGHAV---DSIRDEIFISASEMSD 353
           FIC Y  R      +S    +      N+  FH E  G +    D +RD  +I A E   
Sbjct: 128 FICKYCARHF---TKSYNLMIHERTHTNERPFHCETCGKSFRRQDHLRDHKYIHAKEKPH 184

Query: 354 EIDICG 371
           + +ICG
Sbjct: 185 KCEICG 190


>AL031620-4|CAA20925.1|  456|Caenorhabditis elegans Hypothetical
           protein C18B12.4 protein.
          Length = 456

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
 Frame = -3

Query: 456 AVTRYVTNRF--ILRSYHFKQSDAHLILYGTRRYLFHRSSLTLR*KFHLVSNQQHDPSLQ 283
           ++T +V N F  +  S   +  D H  L G   YL  R   T     HL+ N+  DP+  
Sbjct: 361 SITGFVRNAFRKLRNSPRHRDVDVHSGLEGGS-YLV-RQQTTSNDNDHLLENEVSDPTSS 418

Query: 282 SEIHI 268
           SE++I
Sbjct: 419 SELNI 423


>AL032655-7|CAH60798.1|  329|Caenorhabditis elegans Hypothetical
           protein Y6B3B.12 protein.
          Length = 329

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 17/48 (35%), Positives = 26/48 (54%)
 Frame = -2

Query: 373 NPQISISSLISDAEIKISSRIESTA*PFPSK*NSYLFSVHSVTSGALV 230
           NP + ISS+I++A    S      A PFP+  +S L +   +T+ A V
Sbjct: 111 NPALPISSIIAEAVKNASPPTNKAAEPFPTPSSSNL-TYARITAAAAV 157


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,622,948
Number of Sequences: 27780
Number of extensions: 204234
Number of successful extensions: 392
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 384
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 392
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)