Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS330B02f
(521 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1322.01 ||SPCC23B6.06|3'-5' exonuclease for RNA 3' ss-tail|S... 29 0.42
SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11 |Schizosacc... 27 1.3
SPAC3H8.10 |spo20|sec14|sec14 cytosolic factor family Sec14|Schi... 27 1.3
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce... 26 3.0
SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr 3||... 26 3.0
SPAC56E4.06c |ggt2||gamma-glutamyltranspeptidase Ggt2|Schizosacc... 25 5.2
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein... 25 5.2
SPBP16F5.08c |||flavin dependent monooxygenase |Schizosaccharomy... 25 5.2
SPCC1919.12c |||aminopeptidase |Schizosaccharomyces pombe|chr 3|... 25 6.8
SPBC3H7.14 |mug176||BRCT domain protein|Schizosaccharomyces pomb... 25 9.0
SPBC83.13 |||mitochondrial tricarboxylic acid transporter|Schizo... 25 9.0
SPBC428.07 |meu6||meiotic chromosome segregation protein Meu6|Sc... 25 9.0
SPBC16G5.17 |||transcription factor, zf-fungal binuclear cluster... 25 9.0
SPAC23H4.13c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 25 9.0
>SPCC1322.01 ||SPCC23B6.06|3'-5' exonuclease for RNA 3'
ss-tail|Schizosaccharomyces pombe|chr 3|||Manual
Length = 957
Score = 29.1 bits (62), Expect = 0.42
Identities = 15/47 (31%), Positives = 24/47 (51%)
Frame = +1
Query: 34 YYINGYMYILICRLRITAWTWTSASPRQRSKTTLVSIAARTPILDFK 174
Y+ N +Y+L + W+ S+S QR+ T I+ ILD+K
Sbjct: 567 YHPNKIVYMLPLNITQKYWSLDSSSTAQRALTFSAKISKNGDILDYK 613
>SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1284
Score = 27.5 bits (58), Expect = 1.3
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = +1
Query: 31 RYYINGYMYILICRLRITAWTWTSASPR 114
RYY + +Y L + RI TWTS S R
Sbjct: 935 RYYEDQELYALCQQSRIIGCTWTSLSTR 962
>SPAC3H8.10 |spo20|sec14|sec14 cytosolic factor family
Sec14|Schizosaccharomyces pombe|chr 1|||Manual
Length = 286
Score = 27.5 bits (58), Expect = 1.3
Identities = 12/21 (57%), Positives = 16/21 (76%)
Frame = +3
Query: 228 RMDDEFLIRFLRARNFIPQKA 290
R+DD L+RFLRAR F Q++
Sbjct: 47 RLDDATLLRFLRARKFNLQQS 67
>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1666
Score = 26.2 bits (55), Expect = 3.0
Identities = 12/49 (24%), Positives = 25/49 (51%)
Frame = +3
Query: 42 KWIYVYSNMPTPDYSVDLDLGEPPPEIEDYARQHCGEDPNTRLQAIYEL 188
K + V+SN+ P++ ++ P E+ DY R+ + LQ + ++
Sbjct: 634 KRVIVHSNLLNPEWLMNYFSRFSPDEVYDYLREMLRSNLRQNLQIVVQI 682
>SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 1315
Score = 26.2 bits (55), Expect = 3.0
Identities = 16/52 (30%), Positives = 29/52 (55%), Gaps = 4/52 (7%)
Frame = +1
Query: 355 ELDPVSKYLQS----ASLRHFEKAARHENPLVVAAGNYIPDPVDRLVNRRRR 498
+L P SK Q+ A + ++ AA +N + ++ N+I +RL+NRR +
Sbjct: 1246 QLTPTSKSFQNFLIFAGVIYYLLAASGQNYIFISMTNFISHLNNRLLNRRTK 1297
>SPAC56E4.06c |ggt2||gamma-glutamyltranspeptidase
Ggt2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 611
Score = 25.4 bits (53), Expect = 5.2
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = -1
Query: 302 IQSMSFLRYEISSTKESNQEFIIHPVRGTFTALINHVP 189
+ ++ L Y ISS + +F H VRG A+ + VP
Sbjct: 52 LMTLFVLVYSISSNLHTPTQFTGHKVRGRRGAVASEVP 89
>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 670
Score = 25.4 bits (53), Expect = 5.2
Identities = 10/32 (31%), Positives = 18/32 (56%)
Frame = +1
Query: 292 IDWIAVGAPWFQRNVDLHDDLELDPVSKYLQS 387
++W V Q NV L +++E P S+Y+ +
Sbjct: 39 LEWSVVSTDPLQANVWLINEVEYPPTSRYIMT 70
>SPBP16F5.08c |||flavin dependent monooxygenase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 447
Score = 25.4 bits (53), Expect = 5.2
Identities = 13/41 (31%), Positives = 19/41 (46%)
Frame = -3
Query: 243 IHHPSCEGYIHRAHKSCPLVRRWLEVEYWGPRRNADERSLR 121
+ +P YI++ H C LE E+ P ERS+R
Sbjct: 390 LDYPKDATYINKLHDWCKQATPVLEEEFPSPYWGEKERSIR 430
>SPCC1919.12c |||aminopeptidase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 843
Score = 25.0 bits (52), Expect = 6.8
Identities = 16/53 (30%), Positives = 29/53 (54%)
Frame = -1
Query: 284 LRYEISSTKESNQEFIIHPVRGTFTALINHVP*FVDGLKSSIGVLAAMLTSVV 126
++ E++ + E II P TF + H+P +V G+K+S G+L + V+
Sbjct: 795 VKAEVTCLYDDIHEGII-PAYNTF---VEHLPSWVAGVKASTGLLKVKSSIVI 843
>SPBC3H7.14 |mug176||BRCT domain protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 406
Score = 24.6 bits (51), Expect = 9.0
Identities = 13/35 (37%), Positives = 16/35 (45%)
Frame = -1
Query: 329 LWNHGAPTAIQSMSFLRYEISSTKESNQEFIIHPV 225
LWN P A S S IS E+ Q+F + V
Sbjct: 130 LWNPTVPMAYLSRSLQGLTISKINETEQKFPLSSV 164
>SPBC83.13 |||mitochondrial tricarboxylic acid
transporter|Schizosaccharomyces pombe|chr 2|||Manual
Length = 293
Score = 24.6 bits (51), Expect = 9.0
Identities = 13/41 (31%), Positives = 19/41 (46%)
Frame = -3
Query: 219 YIHRAHKSCPLVRRWLEVEYWGPRRNADERSLRSLAGARRG 97
+I + K L+ E+EYWG R S ++AG G
Sbjct: 72 WIEASTKGAVLLFTSAELEYWGRRLGLGATSAGAIAGMGGG 112
>SPBC428.07 |meu6||meiotic chromosome segregation protein
Meu6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 651
Score = 24.6 bits (51), Expect = 9.0
Identities = 14/43 (32%), Positives = 19/43 (44%)
Frame = +1
Query: 331 NVDLHDDLELDPVSKYLQSASLRHFEKAARHENPLVVAAGNYI 459
N+D DD DP S + +K A+ E PL G Y+
Sbjct: 75 NIDPADD---DPNSVAAPKVEEKKSKKKAKDEKPLTYTTGGYL 114
>SPBC16G5.17 |||transcription factor, zf-fungal binuclear cluster
type |Schizosaccharomyces pombe|chr 2|||Manual
Length = 560
Score = 24.6 bits (51), Expect = 9.0
Identities = 7/17 (41%), Positives = 13/17 (76%)
Frame = -1
Query: 131 VVFDLWRGLAEVQVHAV 81
V+F LWR + +++HA+
Sbjct: 236 VIFRLWRNIDRIRLHAI 252
>SPAC23H4.13c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 184
Score = 24.6 bits (51), Expect = 9.0
Identities = 10/44 (22%), Positives = 23/44 (52%)
Frame = +3
Query: 168 LQAIYELRDMIYERGECTPHRMDDEFLIRFLRARNFIPQKAHRL 299
++ Y D +R + HR+DD+ +++ + + I +K R+
Sbjct: 75 IKLYYNFMDGFNKRTDTLQHRVDDKKILKTIEKWSCIKEKLRRV 118
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,145,892
Number of Sequences: 5004
Number of extensions: 42560
Number of successful extensions: 132
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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