Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS330B02f
(521 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_07_0384 + 43209423-43210241 32 0.32
02_05_0562 - 29970207-29970224,29970290-29970364,29971083-299714... 31 0.56
02_04_0108 + 19808539-19808761,19809054-19809697,19809785-198098... 31 0.56
09_06_0351 + 22466160-22466217,22466514-22467052,22467186-224672... 29 1.7
03_06_0559 + 34719296-34719410,34719519-34719577,34719664-347213... 29 2.3
02_03_0040 + 14262137-14262182,14262456-14262738,14262824-142629... 28 4.0
04_01_0527 - 6913266-6913802 28 5.2
10_01_0115 - 1426573-1426590,1426838-1426912,1427106-1427464,142... 27 6.9
05_07_0020 + 27097140-27097676,27097857-27098036,27099361-270994... 27 9.1
>01_07_0384 + 43209423-43210241
Length = 272
Score = 31.9 bits (69), Expect = 0.32
Identities = 16/51 (31%), Positives = 23/51 (45%)
Frame = -3
Query: 219 YIHRAHKSCPLVRRWLEVEYWGPRRNADERSLRSLAGARRGPSPRCNPESA 67
YIHRA + +WG +A L+ L A +GP+PR P +
Sbjct: 158 YIHRAGTNLTPSAACCTCAFWGYYPDAQAVKLQELVWAEKGPAPRRRPRQS 208
>02_05_0562 -
29970207-29970224,29970290-29970364,29971083-29971441,
29971572-29971713,29971906-29972025,29972139-29972216,
29972330-29972429,29972522-29972571,29972827-29972904,
29973624-29973751,29973776-29973977,29974045-29974144,
29974236-29974551,29974645-29974690,29975526-29975622,
29977254-29977258,29977643-29977708,29978631-29978690,
29979167-29979272,29979513-29979658,29980731-29980813,
29980951-29981056,29996243-29996266,29996378-29996438,
29996467-29996750,29996914-29997096
Length = 1010
Score = 31.1 bits (67), Expect = 0.56
Identities = 16/41 (39%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
Frame = +3
Query: 171 QAIYELRDMIYERGECTPHRMDD-EFLIRFLRARNFIPQKA 290
QA+ R++++ R + P R DD ++RFL+AR F +KA
Sbjct: 501 QAVSSFREVLFAR-DMLPERHDDYHTMLRFLKARKFDVEKA 540
>02_04_0108 +
19808539-19808761,19809054-19809697,19809785-19809844,
19809879-19809938,19810079-19810372
Length = 426
Score = 31.1 bits (67), Expect = 0.56
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = -1
Query: 167 SSIGVLAAMLTSVVFDLWRGLAEVQVHAVIRSRHIRIYIY 48
S + V+ A+ S++ WR +A V V RHI + IY
Sbjct: 33 SKLNVVDAIRASILSSAWRNVATYSVRYVSHLRHITVQIY 72
>09_06_0351 +
22466160-22466217,22466514-22467052,22467186-22467293,
22467391-22467546,22467916-22468131,22468639-22468776,
22468880-22468981,22469089-22469146,22469346-22469408,
22469543-22469640
Length = 511
Score = 29.5 bits (63), Expect = 1.7
Identities = 12/31 (38%), Positives = 20/31 (64%)
Frame = +1
Query: 367 VSKYLQSASLRHFEKAARHENPLVVAAGNYI 459
VS Y +S S+ F+ +AR P+V ++ NY+
Sbjct: 53 VSNYSRSTSMERFQLSARFHQPVVDSSTNYL 83
>03_06_0559 +
34719296-34719410,34719519-34719577,34719664-34721322,
34722421-34722562,34722645-34723330
Length = 886
Score = 29.1 bits (62), Expect = 2.3
Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Frame = +3
Query: 108 PPPEIEDYARQHCGEDPNTRLQAIYELRDMIYERGE--CTPHRMDDEFLIR 254
P P + + R+ G P+TR + E + E E C+ +DDE L+R
Sbjct: 36 PAPRVSENFRESDGGTPSTRPNSFLEDAPSLKESSEHSCSSSVVDDEALVR 86
>02_03_0040 +
14262137-14262182,14262456-14262738,14262824-14262923,
14263027-14263293,14263378-14263455,14263552-14263653,
14263731-14263780,14263864-14263957,14264060-14264161,
14264855-14264960,14265056-14265414,14265572-14265646,
14265890-14265907
Length = 559
Score = 28.3 bits (60), Expect = 4.0
Identities = 15/49 (30%), Positives = 25/49 (51%)
Frame = +3
Query: 153 DPNTRLQAIYELRDMIYERGECTPHRMDDEFLIRFLRARNFIPQKAHRL 299
DP +QA+ R ++ H D ++RFL+AR F +KA ++
Sbjct: 78 DPE-EVQAVDAFRQLLVLEELLPSHHDDYHMMLRFLKARKFDVEKAKQM 125
>04_01_0527 - 6913266-6913802
Length = 178
Score = 27.9 bits (59), Expect = 5.2
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = +3
Query: 438 RGRRKLHTRSCRPFGKPSTSPK 503
R RR+ H R CRP P SP+
Sbjct: 100 RRRRRAHRRQCRPSPPPPLSPE 121
>10_01_0115 -
1426573-1426590,1426838-1426912,1427106-1427464,
1427551-1427656,1428091-1428207,1428319-1428420,
1428520-1428613,1428697-1428746,1429029-1429106,
1429189-1429455,1429573-1429672,1429757-1430039,
1430312-1430357
Length = 564
Score = 27.5 bits (58), Expect = 6.9
Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Frame = +3
Query: 153 DPNTRLQAIYELRDMIYERGECTPHRMDD-EFLIRFLRARNFIPQKAHRL 299
DP +QA+ R ++ E P + DD ++RFL+AR F +KA ++
Sbjct: 78 DPE-EVQAVDAFRQLLILE-ELLPSQHDDYHMMLRFLKARKFDVEKAKQM 125
>05_07_0020 +
27097140-27097676,27097857-27098036,27099361-27099456,
27099557-27099706,27099794-27099925
Length = 364
Score = 27.1 bits (57), Expect = 9.1
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = -3
Query: 468 RIGYVVSGGHDKRVLMSCRLLK 403
RIGYV +G HD + S R++K
Sbjct: 279 RIGYVSTGLHDDEIARSLRMVK 300
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,820,226
Number of Sequences: 37544
Number of extensions: 317256
Number of successful extensions: 1031
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1001
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1031
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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