Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS330B02f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41749-6|AAB52487.2|   90|Caenorhabditis elegans Hypothetical pr...    29   2.0  
Z83106-5|CAB05492.1|  392|Caenorhabditis elegans Hypothetical pr...    29   2.7  
U50071-2|AAA93447.2| 6994|Caenorhabditis elegans Uncoordinated p...    27   6.2  
U39847-1|AAB41827.1| 6994|Caenorhabditis elegans AO13 ankyrin pr...    27   6.2  
AC006617-1|AAF39770.2|  397|Caenorhabditis elegans Hypothetical ...    27   6.2  
Z82062-6|CAB04894.1|  312|Caenorhabditis elegans Hypothetical pr...    27   8.1  
Z81587-14|CAB04711.1|  312|Caenorhabditis elegans Hypothetical p...    27   8.1  

>U41749-6|AAB52487.2|   90|Caenorhabditis elegans Hypothetical
           protein F09E10.1 protein.
          Length = 90

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 11/36 (30%), Positives = 16/36 (44%)
 Frame = -3

Query: 183 RRWLEVEYWGPRRNADERSLRSLAGARRGPSPRCNP 76
           + WL+   WGP ++     L      RR P+  C P
Sbjct: 39  KNWLKNGRWGPTQHPGHEELDRPPNGRRAPTVACEP 74


>Z83106-5|CAB05492.1|  392|Caenorhabditis elegans Hypothetical
           protein F22B8.6 protein.
          Length = 392

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 21/73 (28%), Positives = 38/73 (52%), Gaps = 8/73 (10%)
 Frame = +1

Query: 316 PWFQRNVDLHDDLELDPVSKY-------LQSASLRHFEKAARHENPLVVAAGNYIPDPVD 474
           P+FQR + L  D+ +  ++KY       +  A++ + ++  +H + +  A G  +P P D
Sbjct: 184 PYFQRPLSLGADIAVHSITKYINGHSDIIMGAAITNNDEFQQHLHFMQRAIGG-VPSPFD 242

Query: 475 -RLVNRRRRPKHV 510
             LVNR  +  HV
Sbjct: 243 CFLVNRGLKTLHV 255


>U50071-2|AAA93447.2| 6994|Caenorhabditis elegans Uncoordinated
            protein 44, isoform f protein.
          Length = 6994

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = +1

Query: 343  HDDLELDPVSKYLQSASLRHFEKAARHENPLVVAAGNYI 459
            H D E +  ++ + S   RH ++    E+P +V +G YI
Sbjct: 5374 HSDEEDENDAEVIDSEFYRHSQEQNNEEDPSIVESGEYI 5412


>U39847-1|AAB41827.1| 6994|Caenorhabditis elegans AO13 ankyrin
            protein.
          Length = 6994

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = +1

Query: 343  HDDLELDPVSKYLQSASLRHFEKAARHENPLVVAAGNYI 459
            H D E +  ++ + S   RH ++    E+P +V +G YI
Sbjct: 5374 HSDEEDENDAEVIDSEFYRHSQEQNNEEDPSIVESGEYI 5412


>AC006617-1|AAF39770.2|  397|Caenorhabditis elegans Hypothetical
           protein C39B5.6 protein.
          Length = 397

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = -3

Query: 243 IHHPSCEGYIHRAHKSCPLVRRWLEVEYWGPR 148
           IHH  C+G +HR H          + + WG R
Sbjct: 95  IHHAICDGELHRGHIRVDANVSLAKDDVWGTR 126


>Z82062-6|CAB04894.1|  312|Caenorhabditis elegans Hypothetical
           protein W02A11.1 protein.
          Length = 312

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 17/46 (36%), Positives = 22/46 (47%)
 Frame = +1

Query: 46  GYMYILICRLRITAWTWTSASPRQRSKTTLVSIAARTPILDFKPST 183
           GY+YIL    R T+  WT A PR+         A    +LD KP +
Sbjct: 67  GYVYIL----RPTSDLWTRALPRRTQILYTADCAQILSLLDAKPGS 108


>Z81587-14|CAB04711.1|  312|Caenorhabditis elegans Hypothetical
           protein W02A11.1 protein.
          Length = 312

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 17/46 (36%), Positives = 22/46 (47%)
 Frame = +1

Query: 46  GYMYILICRLRITAWTWTSASPRQRSKTTLVSIAARTPILDFKPST 183
           GY+YIL    R T+  WT A PR+         A    +LD KP +
Sbjct: 67  GYVYIL----RPTSDLWTRALPRRTQILYTADCAQILSLLDAKPGS 108


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,055,590
Number of Sequences: 27780
Number of extensions: 250452
Number of successful extensions: 693
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 669
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 693
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)