Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS330A11f
         (470 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1952.14c |mrpl25||mitochondrial ribosomal protein subunit L2...    27   1.4  
SPAC1687.22c |puf3|SPAC222.02c|RNA-binding protein Puf3 |Schizos...    26   2.5  
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    26   2.5  
SPAC2F7.15 |rsm24||mitochondrial ribosomal protein subunit S24|S...    26   3.3  
SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyce...    25   5.8  
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha...    25   5.8  
SPAC644.17c |mrpl9||mitochondrial ribosomal protein subunit L9|S...    25   7.7  
SPBC337.13c |gtr1||Gtr1/RagA G protein Gtr1|Schizosaccharomyces ...    25   7.7  
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    25   7.7  

>SPAC1952.14c |mrpl25||mitochondrial ribosomal protein subunit
           L25|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 148

 Score = 27.1 bits (57), Expect = 1.4
 Identities = 12/27 (44%), Positives = 19/27 (70%)
 Frame = -1

Query: 407 LSIALQKSSFCTTLKICRLLYFSNFSI 327
           LS +L+K+S     ++C+LLYF +F I
Sbjct: 119 LSESLKKTSKFKNERVCKLLYFHDFLI 145


>SPAC1687.22c |puf3|SPAC222.02c|RNA-binding protein Puf3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 732

 Score = 26.2 bits (55), Expect = 2.5
 Identities = 12/34 (35%), Positives = 17/34 (50%), Gaps = 2/34 (5%)
 Frame = -2

Query: 226 TWQA--GSGPAGYSGTPAAPSGRPDGLPYRDGRR 131
           TW +  G  P     TP APS    G P+ +G++
Sbjct: 89  TWLSLDGDSPDSLVSTPTAPSANHHGNPFPNGKQ 122


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 3655

 Score = 26.2 bits (55), Expect = 2.5
 Identities = 16/58 (27%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
 Frame = +1

Query: 235 MVKTRRPTLQARTTLKLALLNILFNS-YDTCFIEKLLK*RRRHILSVVQNELFCSAIE 405
           +++T   TL  +  +   ++ +L    +D CF  K L    RHILS     LF   ++
Sbjct: 292 ILRTHPNTLSEKDIIPDIVIKLLRRCPFDMCFARKELLVATRHILSTNLKSLFVKKLD 349


>SPAC2F7.15 |rsm24||mitochondrial ribosomal protein subunit
           S24|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 258

 Score = 25.8 bits (54), Expect = 3.3
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -1

Query: 395 LQKSSFCTTLKICRLLYFSNF 333
           L KSSFC T +   + YF+ F
Sbjct: 20  LSKSSFCATSRAFSVFYFTRF 40


>SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 964

 Score = 25.0 bits (52), Expect = 5.8
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +1

Query: 169 QTVPLVSRNTPLDQNQPARS 228
           QT P++  N P+  N PA++
Sbjct: 662 QTAPMIQPNVPVSANSPAQA 681


>SPBC660.15 |||mRNA cleavage factor complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 474

 Score = 25.0 bits (52), Expect = 5.8
 Identities = 13/35 (37%), Positives = 15/35 (42%)
 Frame = -2

Query: 238 PFFPTWQAGSGPAGYSGTPAAPSGRPDGLPYRDGR 134
           PF P+  +GS   GY G       R      RDGR
Sbjct: 425 PFSPSMPSGSSRGGYHGRNPGGPNRQRYRGRRDGR 459


>SPAC644.17c |mrpl9||mitochondrial ribosomal protein subunit
           L9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 259

 Score = 24.6 bits (51), Expect = 7.7
 Identities = 16/56 (28%), Positives = 22/56 (39%)
 Frame = -3

Query: 264 LQGRTPGFNHFSRPGRLVLVQRGIPGHQRHRLGGLTGCRTETADVSQPSIRLEGSV 97
           L  RTPG    +     VL  R + GH  HR   +        D     I ++GS+
Sbjct: 182 LSHRTPGSTGQNTTPSRVLPGRKMAGHMGHRSRTVKNLLVWAVDADLECILVKGSI 237


>SPBC337.13c |gtr1||Gtr1/RagA G protein Gtr1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 308

 Score = 24.6 bits (51), Expect = 7.7
 Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 4/46 (8%)
 Frame = +1

Query: 295 NILFNSYDT----CFIEKLLK*RRRHILSVVQNELFCSAIESTSFE 420
           N++ N +D      F+E  L  +R HI   VQ  ++   +ES  FE
Sbjct: 50  NLVLNLWDCGGQEAFMENYLSAQRDHIFRNVQVLIYVFDVESREFE 95


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 24.6 bits (51), Expect = 7.7
 Identities = 9/20 (45%), Positives = 10/20 (50%)
 Frame = -2

Query: 214 GSGPAGYSGTPAAPSGRPDG 155
           G GP G+ G P    G P G
Sbjct: 227 GGGPGGFEGGPGGFGGGPGG 246


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,921,507
Number of Sequences: 5004
Number of extensions: 36217
Number of successful extensions: 88
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 88
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 180421690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)