Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS330A11f
(470 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_07_0002 - 27171791-27172222 29 1.4
09_02_0279 + 6702517-6702948 29 1.4
09_01_0043 + 790859-790873,791410-791603,792521-792605,792719-79... 29 1.4
05_04_0200 + 18986183-18986330,18986434-18986513,18987237-189874... 28 3.3
04_01_0556 - 7156851-7157096,7157288-7157530,7158112-7158153,715... 28 3.3
12_02_0780 + 23094989-23095380,23096132-23096573,23096687-230973... 28 4.4
11_01_0118 - 912054-912454,913019-913067 28 4.4
10_07_0062 - 12499872-12501350 27 5.8
09_06_0081 + 20745627-20748144,20748211-20748308 27 5.8
07_01_0594 + 4428440-4429837 27 7.6
04_04_1633 + 34928139-34928511,34928700-34928774,34929385-349294... 27 7.6
04_04_1122 + 31052497-31052629,31053133-31053191,31053285-310535... 27 7.6
01_06_1507 - 37838645-37839311,37839393-37839499,37839588-378396... 27 7.6
>11_07_0002 - 27171791-27172222
Length = 143
Score = 29.5 bits (63), Expect = 1.4
Identities = 16/35 (45%), Positives = 18/35 (51%), Gaps = 4/35 (11%)
Frame = -2
Query: 220 QAGSGPAGYSGTPAAPSGRPDG----LPYRDGRRF 128
+AGS PAG G+PA G P G P GR F
Sbjct: 65 RAGSTPAGVRGSPAGAGGSPGGGSGSTPVGGGRSF 99
>09_02_0279 + 6702517-6702948
Length = 143
Score = 29.5 bits (63), Expect = 1.4
Identities = 16/35 (45%), Positives = 18/35 (51%), Gaps = 4/35 (11%)
Frame = -2
Query: 220 QAGSGPAGYSGTPAAPSGRPDG----LPYRDGRRF 128
+AGS PAG G+PA G P G P GR F
Sbjct: 65 RAGSTPAGVRGSPAGAGGSPGGGSGSTPVGGGRSF 99
>09_01_0043 +
790859-790873,791410-791603,792521-792605,792719-793075
Length = 216
Score = 29.5 bits (63), Expect = 1.4
Identities = 15/33 (45%), Positives = 18/33 (54%)
Frame = -2
Query: 235 FFPTWQAGSGPAGYSGTPAAPSGRPDGLPYRDG 137
F ++GSG AG G+ A GR DG RDG
Sbjct: 113 FTSAGRSGSGKAGCVGSRADQDGRLDGREVRDG 145
>05_04_0200 +
18986183-18986330,18986434-18986513,18987237-18987431,
18989147-18989233,18990011-18990061,18990211-18990390,
18990863-18991096
Length = 324
Score = 28.3 bits (60), Expect = 3.3
Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
Frame = +1
Query: 205 DQNQPARSGKMVKTRRPT--LQARTTLKLALLNILFNSYDTCFIEKLLK*RRRHILSVVQ 378
D+ RS ++ R T L++ T + LLN L N +D +K LK ++H+L V
Sbjct: 171 DERDAIRSLDLLYRRVETEILRSEATPAMRLLNDLLNLHDGSDDDKWLKKCKKHMLEVFP 230
Query: 379 NE 384
E
Sbjct: 231 RE 232
>04_01_0556 -
7156851-7157096,7157288-7157530,7158112-7158153,
7158324-7158425,7159209-7159342,7161071-7161131,
7161192-7161284,7161557-7161639,7161984-7162239
Length = 419
Score = 28.3 bits (60), Expect = 3.3
Identities = 10/16 (62%), Positives = 10/16 (62%)
Frame = -1
Query: 104 APSAGRPWGEPRRAVW 57
AP PWGEPR A W
Sbjct: 169 APGCNVPWGEPRVAFW 184
>12_02_0780 +
23094989-23095380,23096132-23096573,23096687-23097311,
23098240-23098280,23098371-23098439,23098779-23098879,
23099422-23099500,23099946-23100044,23100123-23100191,
23100283-23100332,23100416-23100497,23100997-23101091,
23101263-23101395
Length = 758
Score = 27.9 bits (59), Expect = 4.4
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = +2
Query: 62 RRGAAHPKDAQPTEPSRRIEG 124
RRGAA P QP P+RR+ G
Sbjct: 47 RRGAAPPPPHQPPLPARRLSG 67
>11_01_0118 - 912054-912454,913019-913067
Length = 149
Score = 27.9 bits (59), Expect = 4.4
Identities = 14/42 (33%), Positives = 19/42 (45%)
Frame = -3
Query: 240 NHFSRPGRLVLVQRGIPGHQRHRLGGLTGCRTETADVSQPSI 115
N+F +P + + R I H H GG TG R QP +
Sbjct: 18 NYFHQPHQAIASMRRIQIHPSHGGGGGTGGRARRQAADQPVV 59
>10_07_0062 - 12499872-12501350
Length = 492
Score = 27.5 bits (58), Expect = 5.8
Identities = 18/50 (36%), Positives = 24/50 (48%)
Frame = -3
Query: 231 SRPGRLVLVQRGIPGHQRHRLGGLTGCRTETADVSQPSIRLEGSVGWASL 82
+R R VLV+ + + RHR GG +TA S +R GW SL
Sbjct: 328 ARGDRSVLVRGNLHWYLRHRDGGCKIMVFDTASESFQWMRHPAIPGWVSL 377
>09_06_0081 + 20745627-20748144,20748211-20748308
Length = 871
Score = 27.5 bits (58), Expect = 5.8
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = -2
Query: 238 PFFPTWQAGSGPAGYSGTPAAPSGRPDGLP 149
P T +A + PA + PAAP P GLP
Sbjct: 711 PAAATPRAPTPPAAAAAAPAAPPALPSGLP 740
>07_01_0594 + 4428440-4429837
Length = 465
Score = 27.1 bits (57), Expect = 7.6
Identities = 11/30 (36%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
Frame = -1
Query: 461 WEKMK--WCYCEPHRTSKDVLSIALQKSSF 378
W +++ W Y EPH ++ LS+ K SF
Sbjct: 267 WTRVEVGWEYMEPHEYRREFLSVVHHKGSF 296
>04_04_1633 +
34928139-34928511,34928700-34928774,34929385-34929483,
34929736-34929908,34929990-34930066,34930182-34930301,
34930385-34930472,34930610-34930716,34930814-34930871
Length = 389
Score = 27.1 bits (57), Expect = 7.6
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = +1
Query: 46 QHYNQTARRGSPQGR 90
QHYN ++G PQGR
Sbjct: 33 QHYNSLPKKGKPQGR 47
>04_04_1122 +
31052497-31052629,31053133-31053191,31053285-31053579,
31054099-31054279,31054739-31054956,31055522-31055739,
31055842-31055958,31056106-31056128,31056223-31056438,
31056536-31056677,31056822-31057067,31057659-31057856,
31058331-31058379,31060835-31060911,31061266-31061551,
31061661-31061841,31062149-31062344,31062630-31062738,
31062861-31062961,31063155-31063267,31063347-31063442,
31063531-31063746,31063857-31063995,31064087-31064332,
31064605-31064940
Length = 1396
Score = 27.1 bits (57), Expect = 7.6
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Frame = +1
Query: 223 RSGKMVKTRRPTLQARTTLKLALLNILFNSYDTCFIEKL-LK*RRRH 360
R G T R LQART +L L + + YDT ++ + L+ R+H
Sbjct: 717 RRGVTRGTHRKELQARTRDQLQTLELSTSLYDTAWVAMVPLRGSRQH 763
>01_06_1507 - 37838645-37839311,37839393-37839499,37839588-37839663,
37839747-37839869,37840051-37840208,37840311-37840385,
37840466-37840506,37840594-37840670,37840755-37840883,
37840990-37841060,37841237-37841332,37841489-37841584,
37841681-37841953,37842871-37842957,37843101-37843178,
37843350-37843514,37843622-37843768,37843921-37843983,
37844082-37844201,37844352-37844543,37844672-37844748,
37845094-37845196,37845684-37845887
Length = 1074
Score = 27.1 bits (57), Expect = 7.6
Identities = 11/19 (57%), Positives = 12/19 (63%)
Frame = -2
Query: 217 AGSGPAGYSGTPAAPSGRP 161
AGSGP G PA P+ RP
Sbjct: 1031 AGSGPYGGGAPPARPNSRP 1049
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,591,573
Number of Sequences: 37544
Number of extensions: 273012
Number of successful extensions: 903
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 880
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 903
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 955200320
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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