Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS330A11f
(470 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81050-3|CAB02849.1| 291|Caenorhabditis elegans Hypothetical pr... 31 0.42
Z70682-4|CAA94581.1| 299|Caenorhabditis elegans Hypothetical pr... 31 0.55
AL021448-3|CAA16275.1| 291|Caenorhabditis elegans Hypothetical ... 31 0.55
Z67990-1|CAA91932.1| 316|Caenorhabditis elegans Hypothetical pr... 30 0.73
L11247-3|AAA28008.1| 278|Caenorhabditis elegans Collagen protei... 30 0.96
AF099925-3|AAC69507.1| 394|Caenorhabditis elegans Collagen prot... 30 0.96
U50191-3|AAK31557.1| 380|Caenorhabditis elegans Dumpy : shorter... 29 1.7
L12706-1|AAA17398.2| 360|Caenorhabditis elegans collagen protein. 29 1.7
Z93398-8|CAJ80823.1| 3424|Caenorhabditis elegans Hypothetical pr... 29 2.2
Z93398-5|CAD90186.2| 3436|Caenorhabditis elegans Hypothetical pr... 29 2.2
Z93398-3|CAH04742.1| 3322|Caenorhabditis elegans Hypothetical pr... 29 2.2
Z93398-2|CAH04741.1| 3323|Caenorhabditis elegans Hypothetical pr... 29 2.2
Z93398-1|CAH04740.1| 3405|Caenorhabditis elegans Hypothetical pr... 29 2.2
Z92788-8|CAJ80815.1| 3424|Caenorhabditis elegans Hypothetical pr... 29 2.2
Z92788-5|CAD90175.2| 3436|Caenorhabditis elegans Hypothetical pr... 29 2.2
Z92788-3|CAH04710.1| 3322|Caenorhabditis elegans Hypothetical pr... 29 2.2
Z92788-2|CAH04709.1| 3323|Caenorhabditis elegans Hypothetical pr... 29 2.2
Z92788-1|CAH04708.1| 3405|Caenorhabditis elegans Hypothetical pr... 29 2.2
AJ505904-1|CAD44515.1| 3436|Caenorhabditis elegans VAB-10A prote... 29 2.2
AJ505903-1|CAD44514.1| 3436|Caenorhabditis elegans VAB-10A prote... 29 2.2
AJ505815-1|CAD44323.1| 3436|Caenorhabditis elegans VAB-10A prote... 29 2.2
AC024811-5|AAF60775.1| 285|Caenorhabditis elegans Collagen prot... 29 2.2
Z74037-4|CAA98490.1| 295|Caenorhabditis elegans Hypothetical pr... 28 2.9
Z27078-7|CAE52901.2| 1502|Caenorhabditis elegans Hypothetical pr... 28 2.9
Z27078-6|CAA81584.4| 1759|Caenorhabditis elegans Hypothetical pr... 28 2.9
X56979-1|CAA40299.1| 1758|Caenorhabditis elegans alpha1(IV) coll... 28 2.9
Z68335-1|CAA92729.1| 299|Caenorhabditis elegans Hypothetical pr... 27 5.1
Z54238-5|CAA90997.1| 299|Caenorhabditis elegans Hypothetical pr... 27 5.1
Z54238-3|CAA90995.1| 299|Caenorhabditis elegans Hypothetical pr... 27 5.1
AY347576-1|AAP97870.1| 299|Caenorhabditis elegans COLlagen stru... 27 5.1
AY347574-1|AAP97868.1| 299|Caenorhabditis elegans COLlagen stru... 27 5.1
AL032627-19|CAD66222.1| 309|Caenorhabditis elegans Hypothetical... 27 5.1
AF125964-1|AAD14753.1| 471|Caenorhabditis elegans Hypothetical ... 27 5.1
Z77132-3|CAB00860.1| 310|Caenorhabditis elegans Hypothetical pr... 27 6.8
Z77132-2|CAB00858.1| 294|Caenorhabditis elegans Hypothetical pr... 27 6.8
Z70756-6|CAA94792.1| 290|Caenorhabditis elegans Hypothetical pr... 27 6.8
Z66498-1|CAA91290.1| 304|Caenorhabditis elegans Hypothetical pr... 27 6.8
AC024775-6|AAK68452.2| 304|Caenorhabditis elegans Collagen prot... 27 6.8
Z78064-2|CAB01508.2| 317|Caenorhabditis elegans Hypothetical pr... 27 9.0
Z78064-1|CAB01509.1| 313|Caenorhabditis elegans Hypothetical pr... 27 9.0
Z70208-2|CAA94136.1| 304|Caenorhabditis elegans Hypothetical pr... 27 9.0
U80439-8|AAB37646.3| 1724|Caenorhabditis elegans Hypothetical pr... 27 9.0
>Z81050-3|CAB02849.1| 291|Caenorhabditis elegans Hypothetical
protein C50B6.4 protein.
Length = 291
Score = 31.1 bits (67), Expect = 0.42
Identities = 16/31 (51%), Positives = 21/31 (67%), Gaps = 2/31 (6%)
Frame = -2
Query: 211 SGPAGYSGTPAAP--SGRPDGLPYRDGRRFT 125
+GPAG +G P AP G+P G P +DG+R T
Sbjct: 171 AGPAGDAGAPGAPGQDGQP-GAPGQDGQRST 200
>Z70682-4|CAA94581.1| 299|Caenorhabditis elegans Hypothetical
protein F08G5.4 protein.
Length = 299
Score = 30.7 bits (66), Expect = 0.55
Identities = 14/25 (56%), Positives = 16/25 (64%)
Frame = -2
Query: 211 SGPAGYSGTPAAPSGRPDGLPYRDG 137
+GPAG G P AP PDG P +DG
Sbjct: 144 AGPAGPDGAPGAPG--PDGQPGQDG 166
>AL021448-3|CAA16275.1| 291|Caenorhabditis elegans Hypothetical
protein Y2H9A.3 protein.
Length = 291
Score = 30.7 bits (66), Expect = 0.55
Identities = 16/31 (51%), Positives = 20/31 (64%), Gaps = 2/31 (6%)
Frame = -2
Query: 211 SGPAGYSGTPAAP--SGRPDGLPYRDGRRFT 125
+GPAG +G P AP G+P G P +DG R T
Sbjct: 171 AGPAGDAGAPGAPGQDGQP-GAPGQDGHRST 200
>Z67990-1|CAA91932.1| 316|Caenorhabditis elegans Hypothetical
protein F02D10.1 protein.
Length = 316
Score = 30.3 bits (65), Expect = 0.73
Identities = 22/48 (45%), Positives = 23/48 (47%)
Frame = -2
Query: 265 PAG*DAWF*PFFPTWQAGSGPAGYSGTPAAPSGRPDGLPYRDGRRFTA 122
PAG P P Q+GSG AG G P P G P G P DG TA
Sbjct: 237 PAGPPGPAGPAGPDGQSGSGSAGGPG-PKGPPG-PAGQPGSDGNPGTA 282
>L11247-3|AAA28008.1| 278|Caenorhabditis elegans Collagen protein
91 protein.
Length = 278
Score = 29.9 bits (64), Expect = 0.96
Identities = 16/30 (53%), Positives = 20/30 (66%), Gaps = 2/30 (6%)
Frame = -2
Query: 208 GPAGYSGTPAAPSGRP--DGLPYRDGRRFT 125
GPAG +G P AP G P DG P ++G+R T
Sbjct: 173 GPAGDAGAPGAP-GAPGNDGQPGQNGQRST 201
>AF099925-3|AAC69507.1| 394|Caenorhabditis elegans Collagen protein
69 protein.
Length = 394
Score = 29.9 bits (64), Expect = 0.96
Identities = 14/32 (43%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Frame = -2
Query: 208 GPAGYSGTPAAPSGRP-DGLPYRDGRRFTAFD 116
GP GY G P P R DG P +G A+D
Sbjct: 144 GPTGYPGAPGEPGSRGLDGRPGANGVTLIAYD 175
>U50191-3|AAK31557.1| 380|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 2 protein.
Length = 380
Score = 29.1 bits (62), Expect = 1.7
Identities = 14/25 (56%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
Frame = -2
Query: 208 GPAGYSGTPAAPSG-RPDGLPYRDG 137
GP+G SG PA P PDG P R G
Sbjct: 126 GPSGDSGLPALPGAPGPDGAPGRPG 150
>L12706-1|AAA17398.2| 360|Caenorhabditis elegans collagen protein.
Length = 360
Score = 29.1 bits (62), Expect = 1.7
Identities = 14/25 (56%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
Frame = -2
Query: 208 GPAGYSGTPAAPSG-RPDGLPYRDG 137
GP+G SG PA P PDG P R G
Sbjct: 126 GPSGDSGLPALPGAPGPDGAPGRPG 150
>Z93398-8|CAJ80823.1| 3424|Caenorhabditis elegans Hypothetical protein
ZK1151.1h protein.
Length = 3424
Score = 28.7 bits (61), Expect = 2.2
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = +1
Query: 253 PTLQARTTLKLALLNILFNSYDTCFIEK 336
P Q + TLK A++ LF+ YDT ++K
Sbjct: 2462 PETQKQLTLKEAIMKGLFDPYDTTIVDK 2489
>Z93398-5|CAD90186.2| 3436|Caenorhabditis elegans Hypothetical protein
ZK1151.1a protein.
Length = 3436
Score = 28.7 bits (61), Expect = 2.2
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = +1
Query: 253 PTLQARTTLKLALLNILFNSYDTCFIEK 336
P Q + TLK A++ LF+ YDT ++K
Sbjct: 2474 PETQKQLTLKEAIMKGLFDPYDTTIVDK 2501
>Z93398-3|CAH04742.1| 3322|Caenorhabditis elegans Hypothetical protein
ZK1151.1f protein.
Length = 3322
Score = 28.7 bits (61), Expect = 2.2
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = +1
Query: 253 PTLQARTTLKLALLNILFNSYDTCFIEK 336
P Q + TLK A++ LF+ YDT ++K
Sbjct: 2360 PETQKQLTLKEAIMKGLFDPYDTTIVDK 2387
>Z93398-2|CAH04741.1| 3323|Caenorhabditis elegans Hypothetical protein
ZK1151.1e protein.
Length = 3323
Score = 28.7 bits (61), Expect = 2.2
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = +1
Query: 253 PTLQARTTLKLALLNILFNSYDTCFIEK 336
P Q + TLK A++ LF+ YDT ++K
Sbjct: 2361 PETQKQLTLKEAIMKGLFDPYDTTIVDK 2388
>Z93398-1|CAH04740.1| 3405|Caenorhabditis elegans Hypothetical protein
ZK1151.1d protein.
Length = 3405
Score = 28.7 bits (61), Expect = 2.2
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = +1
Query: 253 PTLQARTTLKLALLNILFNSYDTCFIEK 336
P Q + TLK A++ LF+ YDT ++K
Sbjct: 2443 PETQKQLTLKEAIMKGLFDPYDTTIVDK 2470
>Z92788-8|CAJ80815.1| 3424|Caenorhabditis elegans Hypothetical protein
ZK1151.1h protein.
Length = 3424
Score = 28.7 bits (61), Expect = 2.2
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = +1
Query: 253 PTLQARTTLKLALLNILFNSYDTCFIEK 336
P Q + TLK A++ LF+ YDT ++K
Sbjct: 2462 PETQKQLTLKEAIMKGLFDPYDTTIVDK 2489
>Z92788-5|CAD90175.2| 3436|Caenorhabditis elegans Hypothetical protein
ZK1151.1a protein.
Length = 3436
Score = 28.7 bits (61), Expect = 2.2
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = +1
Query: 253 PTLQARTTLKLALLNILFNSYDTCFIEK 336
P Q + TLK A++ LF+ YDT ++K
Sbjct: 2474 PETQKQLTLKEAIMKGLFDPYDTTIVDK 2501
>Z92788-3|CAH04710.1| 3322|Caenorhabditis elegans Hypothetical protein
ZK1151.1f protein.
Length = 3322
Score = 28.7 bits (61), Expect = 2.2
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = +1
Query: 253 PTLQARTTLKLALLNILFNSYDTCFIEK 336
P Q + TLK A++ LF+ YDT ++K
Sbjct: 2360 PETQKQLTLKEAIMKGLFDPYDTTIVDK 2387
>Z92788-2|CAH04709.1| 3323|Caenorhabditis elegans Hypothetical protein
ZK1151.1e protein.
Length = 3323
Score = 28.7 bits (61), Expect = 2.2
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = +1
Query: 253 PTLQARTTLKLALLNILFNSYDTCFIEK 336
P Q + TLK A++ LF+ YDT ++K
Sbjct: 2361 PETQKQLTLKEAIMKGLFDPYDTTIVDK 2388
>Z92788-1|CAH04708.1| 3405|Caenorhabditis elegans Hypothetical protein
ZK1151.1d protein.
Length = 3405
Score = 28.7 bits (61), Expect = 2.2
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = +1
Query: 253 PTLQARTTLKLALLNILFNSYDTCFIEK 336
P Q + TLK A++ LF+ YDT ++K
Sbjct: 2443 PETQKQLTLKEAIMKGLFDPYDTTIVDK 2470
>AJ505904-1|CAD44515.1| 3436|Caenorhabditis elegans VAB-10A protein
protein.
Length = 3436
Score = 28.7 bits (61), Expect = 2.2
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = +1
Query: 253 PTLQARTTLKLALLNILFNSYDTCFIEK 336
P Q + TLK A++ LF+ YDT ++K
Sbjct: 2474 PETQKQLTLKEAIMKGLFDPYDTTIVDK 2501
>AJ505903-1|CAD44514.1| 3436|Caenorhabditis elegans VAB-10A protein
protein.
Length = 3436
Score = 28.7 bits (61), Expect = 2.2
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = +1
Query: 253 PTLQARTTLKLALLNILFNSYDTCFIEK 336
P Q + TLK A++ LF+ YDT ++K
Sbjct: 2474 PETQKQLTLKEAIMKGLFDPYDTTIVDK 2501
>AJ505815-1|CAD44323.1| 3436|Caenorhabditis elegans VAB-10A protein
protein.
Length = 3436
Score = 28.7 bits (61), Expect = 2.2
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = +1
Query: 253 PTLQARTTLKLALLNILFNSYDTCFIEK 336
P Q + TLK A++ LF+ YDT ++K
Sbjct: 2474 PETQKQLTLKEAIMKGLFDPYDTTIVDK 2501
>AC024811-5|AAF60775.1| 285|Caenorhabditis elegans Collagen protein
48 protein.
Length = 285
Score = 28.7 bits (61), Expect = 2.2
Identities = 22/74 (29%), Positives = 29/74 (39%), Gaps = 2/74 (2%)
Frame = -2
Query: 229 PTWQAGSGPAGYSGTPAAPSGRPD--GLPYRDGRRFTAFDSPXXXXXXXXXXVSRAAPSG 56
P A GP+G G P AP G+P G P +DG A + +A G
Sbjct: 204 PGGDAPPGPSGPPGRPGAP-GQPGKAGSPGQDGSNGDAGVAGEPGQRGPPGPPGQAGTPG 262
Query: 55 CSVDRGNPPTSSLC 14
D G+P + C
Sbjct: 263 SPGDAGSPGSCEHC 276
>Z74037-4|CAA98490.1| 295|Caenorhabditis elegans Hypothetical
protein F57B7.3 protein.
Length = 295
Score = 28.3 bits (60), Expect = 2.9
Identities = 13/28 (46%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
Frame = -2
Query: 211 SGPAGYSGTPAAPSGR-PDGLPYRDGRR 131
+GP G +GTP P + DG P ++GRR
Sbjct: 173 AGPQGDAGTPGQPGQQGQDGRPGQNGRR 200
>Z27078-7|CAE52901.2| 1502|Caenorhabditis elegans Hypothetical protein
K04H4.1b protein.
Length = 1502
Score = 28.3 bits (60), Expect = 2.9
Identities = 16/38 (42%), Positives = 17/38 (44%), Gaps = 4/38 (10%)
Frame = -2
Query: 238 PFFPTWQAGSGPAGYSGTPAAPSGR----PDGLPYRDG 137
P P Q SG GY G P P + DG P RDG
Sbjct: 1127 PGVPGQQGRSGDNGYPGAPGQPGIKGPRGDDGFPGRDG 1164
>Z27078-6|CAA81584.4| 1759|Caenorhabditis elegans Hypothetical protein
K04H4.1a protein.
Length = 1759
Score = 28.3 bits (60), Expect = 2.9
Identities = 16/38 (42%), Positives = 17/38 (44%), Gaps = 4/38 (10%)
Frame = -2
Query: 238 PFFPTWQAGSGPAGYSGTPAAPSGR----PDGLPYRDG 137
P P Q SG GY G P P + DG P RDG
Sbjct: 1384 PGVPGQQGRSGDNGYPGAPGQPGIKGPRGDDGFPGRDG 1421
>X56979-1|CAA40299.1| 1758|Caenorhabditis elegans alpha1(IV) collagen
protein.
Length = 1758
Score = 28.3 bits (60), Expect = 2.9
Identities = 16/38 (42%), Positives = 17/38 (44%), Gaps = 4/38 (10%)
Frame = -2
Query: 238 PFFPTWQAGSGPAGYSGTPAAPSGR----PDGLPYRDG 137
P P Q SG GY G P P + DG P RDG
Sbjct: 1383 PGVPGQQGRSGDNGYPGAPGQPGIKGPRGDDGFPGRDG 1420
>Z68335-1|CAA92729.1| 299|Caenorhabditis elegans Hypothetical
protein C29F4.1 protein.
Length = 299
Score = 27.5 bits (58), Expect = 5.1
Identities = 19/43 (44%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Frame = -2
Query: 259 G*DAWF*PFFPTWQAGSGPAGYSGTPAAPSGRP--DGLPYRDG 137
G DA P P +GPAG G P AP G+P DG P G
Sbjct: 205 GQDAPSEPITPGAPGPAGPAGPQGQPGAP-GQPGHDGQPGAPG 246
>Z54238-5|CAA90997.1| 299|Caenorhabditis elegans Hypothetical
protein T28C6.6 protein.
Length = 299
Score = 27.5 bits (58), Expect = 5.1
Identities = 19/43 (44%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Frame = -2
Query: 259 G*DAWF*PFFPTWQAGSGPAGYSGTPAAPSGRP--DGLPYRDG 137
G DA P P +GPAG G P AP G+P DG P G
Sbjct: 205 GQDAPSEPITPGAPGPAGPAGPQGPPGAP-GQPGHDGQPGAPG 246
>Z54238-3|CAA90995.1| 299|Caenorhabditis elegans Hypothetical
protein T28C6.4 protein.
Length = 299
Score = 27.5 bits (58), Expect = 5.1
Identities = 19/43 (44%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Frame = -2
Query: 259 G*DAWF*PFFPTWQAGSGPAGYSGTPAAPSGRP--DGLPYRDG 137
G DA P P +GPAG G P AP G+P DG P G
Sbjct: 205 GQDAPSEPITPGAPGPAGPAGPQGPPGAP-GQPGHDGQPGAPG 246
>AY347576-1|AAP97870.1| 299|Caenorhabditis elegans COLlagen
structural gene, probablecuticle component, from embryo
to adult (28.7 kD) (col-3) protein.
Length = 299
Score = 27.5 bits (58), Expect = 5.1
Identities = 19/43 (44%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Frame = -2
Query: 259 G*DAWF*PFFPTWQAGSGPAGYSGTPAAPSGRP--DGLPYRDG 137
G DA P P +GPAG G P AP G+P DG P G
Sbjct: 205 GQDAPSEPITPGAPGPAGPAGPQGPPGAP-GQPGHDGQPGAPG 246
>AY347574-1|AAP97868.1| 299|Caenorhabditis elegans COLlagen
structural gene, probablecuticle component, from embryo
to adult (28.7 kD) (col-117) protein.
Length = 299
Score = 27.5 bits (58), Expect = 5.1
Identities = 19/43 (44%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Frame = -2
Query: 259 G*DAWF*PFFPTWQAGSGPAGYSGTPAAPSGRP--DGLPYRDG 137
G DA P P +GPAG G P AP G+P DG P G
Sbjct: 205 GQDAPSEPITPGAPGPAGPAGPQGPPGAP-GQPGHDGQPGAPG 246
>AL032627-19|CAD66222.1| 309|Caenorhabditis elegans Hypothetical
protein Y41C4A.16 protein.
Length = 309
Score = 27.5 bits (58), Expect = 5.1
Identities = 16/29 (55%), Positives = 16/29 (55%), Gaps = 4/29 (13%)
Frame = -2
Query: 208 GPAGYSGTPAAPS--GRP--DGLPYRDGR 134
GPAG SG P P GRP GLP GR
Sbjct: 113 GPAGPSGAPGKPGRPGRPGAGGLPGNPGR 141
>AF125964-1|AAD14753.1| 471|Caenorhabditis elegans Hypothetical
protein W03G1.5 protein.
Length = 471
Score = 27.5 bits (58), Expect = 5.1
Identities = 13/30 (43%), Positives = 15/30 (50%)
Frame = +1
Query: 13 GTGMR*GGYRGQHYNQTARRGSPQGRPADG 102
G+G GG G H +R GSP GR G
Sbjct: 325 GSGHHRGGRHGGHGRHGSRSGSPGGRHGHG 354
>Z77132-3|CAB00860.1| 310|Caenorhabditis elegans Hypothetical
protein F54D1.3 protein.
Length = 310
Score = 27.1 bits (57), Expect = 6.8
Identities = 16/36 (44%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
Frame = -2
Query: 238 PFFPTWQAG-SGPAGYSGTPAAPSGR-PDGLPYRDG 137
P P +G +GPAG SG P P R DG P G
Sbjct: 167 PAGPAGSSGPAGPAGPSGQPGTPGQRGNDGFPGAPG 202
>Z77132-2|CAB00858.1| 294|Caenorhabditis elegans Hypothetical
protein F54D1.2 protein.
Length = 294
Score = 27.1 bits (57), Expect = 6.8
Identities = 16/36 (44%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
Frame = -2
Query: 238 PFFPTWQAG-SGPAGYSGTPAAPSGR-PDGLPYRDG 137
P P +G +GPAG SG P P R DG P G
Sbjct: 151 PAGPAGSSGPAGPAGPSGQPGTPGQRGNDGFPGAPG 186
>Z70756-6|CAA94792.1| 290|Caenorhabditis elegans Hypothetical
protein T06E4.6 protein.
Length = 290
Score = 27.1 bits (57), Expect = 6.8
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = -2
Query: 238 PFFPTWQAGSGPAGYSGTPAAPSGRPDGLPYRDGR 134
P P G+G G +G P AP G G P +DG+
Sbjct: 216 PGQPGQSGGAGAPGPAGAPGAPGG--PGQPGQDGQ 248
>Z66498-1|CAA91290.1| 304|Caenorhabditis elegans Hypothetical
protein M195.1 protein.
Length = 304
Score = 27.1 bits (57), Expect = 6.8
Identities = 16/29 (55%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
Frame = -2
Query: 214 GSGPAGYSGTPAAPSGRP--DGLPYRDGR 134
GSGPAG GTP GR DG P DG+
Sbjct: 113 GSGPAGPPGTP-GEDGRDGNDGQPGPDGQ 140
>AC024775-6|AAK68452.2| 304|Caenorhabditis elegans Collagen protein
108 protein.
Length = 304
Score = 27.1 bits (57), Expect = 6.8
Identities = 14/25 (56%), Positives = 16/25 (64%)
Frame = -2
Query: 208 GPAGYSGTPAAPSGRPDGLPYRDGR 134
GPAG +G P AP G P G P DG+
Sbjct: 192 GPAGPNGNPGAP-GSP-GKPGEDGK 214
>Z78064-2|CAB01508.2| 317|Caenorhabditis elegans Hypothetical
protein F57B1.4 protein.
Length = 317
Score = 26.6 bits (56), Expect = 9.0
Identities = 14/28 (50%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
Frame = -2
Query: 214 GSGPAGYSGTPAAPSGRPD--GLPYRDG 137
G GP G +G P AP G+P G P +DG
Sbjct: 271 GPGPQGDAGAPGAP-GQPGQAGAPGQDG 297
>Z78064-1|CAB01509.1| 313|Caenorhabditis elegans Hypothetical
protein F57B1.3 protein.
Length = 313
Score = 26.6 bits (56), Expect = 9.0
Identities = 14/28 (50%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
Frame = -2
Query: 214 GSGPAGYSGTPAAPSGRPD--GLPYRDG 137
G GP G +G P AP G+P G P +DG
Sbjct: 267 GPGPQGDAGAPGAP-GQPGQAGAPGQDG 293
>Z70208-2|CAA94136.1| 304|Caenorhabditis elegans Hypothetical
protein F54B11.2 protein.
Length = 304
Score = 26.6 bits (56), Expect = 9.0
Identities = 16/32 (50%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Frame = -2
Query: 229 PTWQAG-SGPAGYSGTPAAPSGRPDGLPYRDG 137
P AG +GP G +G+PAAPS P G P G
Sbjct: 164 PDGPAGPAGPDGEAGSPAAPS--PPGPPGPSG 193
>U80439-8|AAB37646.3| 1724|Caenorhabditis elegans Hypothetical
protein C01G8.9a protein.
Length = 1724
Score = 26.6 bits (56), Expect = 9.0
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = -2
Query: 205 PAGYSGTPAAPSGRPDGLP 149
PAG++ P AP G P G P
Sbjct: 745 PAGFAPPPGAPYGYPPGAP 763
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,060,641
Number of Sequences: 27780
Number of extensions: 224836
Number of successful extensions: 1008
Number of sequences better than 10.0: 42
Number of HSP's better than 10.0 without gapping: 760
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 993
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 850313440
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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