Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS330A09f
         (360 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41013-4|AAA82303.2|  329|Caenorhabditis elegans Serpentine rece...    32   0.14 
AC084268-4|AAK19004.2|   64|Caenorhabditis elegans Hypothetical ...    27   3.9  

>U41013-4|AAA82303.2|  329|Caenorhabditis elegans Serpentine
           receptor, class t protein73 protein.
          Length = 329

 Score = 31.9 bits (69), Expect = 0.14
 Identities = 13/37 (35%), Positives = 22/37 (59%)
 Frame = +2

Query: 206 DKKKLXXYQILFTMXYXKNIRILXQXTAIYMIIK*KP 316
           D KKL  +QI+F + +   I++    TA++ I+  KP
Sbjct: 66  DLKKLSAFQIMFMISFFDTIQLFIHLTAVFYILNSKP 102


>AC084268-4|AAK19004.2|   64|Caenorhabditis elegans Hypothetical
           protein Y92H12BL.2 protein.
          Length = 64

 Score = 27.1 bits (57), Expect = 3.9
 Identities = 12/25 (48%), Positives = 18/25 (72%)
 Frame = -2

Query: 200 KNHNKKCIRE*LFSLYLE*NLKLIF 126
           +N +KKC+ + L S +LE  LK+IF
Sbjct: 40  ENASKKCVNKYLISTFLEFFLKVIF 64


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,949,262
Number of Sequences: 27780
Number of extensions: 81614
Number of successful extensions: 128
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 492763868
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)