Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS330A08f
(521 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces pom... 27 1.7
SPCP31B10.07 |eft202||translation elongation factor 2 |Schizosac... 26 3.0
SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation elon... 26 3.0
SPCC576.15c |ksg1||serine/threonine protein kinase Ksg1|Schizosa... 26 3.9
SPAC17H9.13c |||glutamate 5-kinase |Schizosaccharomyces pombe|ch... 26 3.9
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|... 25 5.2
SPBC106.01 |mph1|SPBC1271.16c, SPBC243.01|dual specificity prote... 25 6.8
SPAC343.09 |ubx3|mug39|UBX domain protein Ubx3|Schizosaccharomyc... 25 6.8
SPAC2F3.14c |||conserved fungal protein|Schizosaccharomyces pomb... 25 9.0
SPAPYUG7.03c |mid2||anillin homologue Mid2|Schizosaccharomyces p... 25 9.0
>SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1562
Score = 27.1 bits (57), Expect = 1.7
Identities = 17/62 (27%), Positives = 25/62 (40%)
Frame = +2
Query: 305 DYEPPILERVHYWADDTRVERDHYPERKSEILMLGVSSRKPSIAATHPPQQTRRPLIRPT 484
D +PPI+E + R R E S + R+P + PPQ P P+
Sbjct: 324 DVDPPIVEEHSSFFRRRRWRRSRSQESASRSTIRSTDEREPERTSEDPPQLPPSP-SSPS 382
Query: 485 TP 490
+P
Sbjct: 383 SP 384
>SPCP31B10.07 |eft202||translation elongation factor 2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 842
Score = 26.2 bits (55), Expect = 3.0
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = +2
Query: 233 PRMDFDQWKPLTGRGDPLRNDPT 301
P++ FD W P++ GDPL DPT
Sbjct: 794 PQLVFDHWSPMS--GDPL--DPT 812
>SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation
elongation factor 2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 842
Score = 26.2 bits (55), Expect = 3.0
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = +2
Query: 233 PRMDFDQWKPLTGRGDPLRNDPT 301
P++ FD W P++ GDPL DPT
Sbjct: 794 PQLVFDHWSPMS--GDPL--DPT 812
>SPCC576.15c |ksg1||serine/threonine protein kinase
Ksg1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 592
Score = 25.8 bits (54), Expect = 3.9
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = -3
Query: 180 PNATTDETMNNITQLSLFQFIFVLYHGAYIKSLALADLSTLR 55
PN ++ + NI ++S F+F +L G+Y L + ST R
Sbjct: 82 PNPSSGASTPNIKRVSDFKFGEILGEGSYSTVLTATENSTKR 123
>SPAC17H9.13c |||glutamate 5-kinase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 402
Score = 25.8 bits (54), Expect = 3.9
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = +3
Query: 288 ETIRPMIMNLLFSKEFIIGLMILGSNVIIIQN 383
+T P+I NL E ++ L LG NV+++ +
Sbjct: 27 KTHEPLISNLSLIVETVVKLRKLGHNVVLVSS 58
>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1752
Score = 25.4 bits (53), Expect = 5.2
Identities = 11/28 (39%), Positives = 13/28 (46%)
Frame = +2
Query: 413 SSRKPSIAATHPPQQTRRPLIRPTTPKY 496
S PS +AT P P PT+P Y
Sbjct: 1600 SPTSPSYSATSPSYSPTSPSYSPTSPSY 1627
>SPBC106.01 |mph1|SPBC1271.16c, SPBC243.01|dual specificity protein
kinase Mph1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 678
Score = 25.0 bits (52), Expect = 6.8
Identities = 13/39 (33%), Positives = 19/39 (48%)
Frame = +2
Query: 203 HSSSLISNFSPRMDFDQWKPLTGRGDPLRNDPTYDYEPP 319
H S S+FSPR+ FD + R L + P ++ P
Sbjct: 236 HPSQFESSFSPRVQFDH--DVERRASELHSRPVTVFQEP 272
>SPAC343.09 |ubx3|mug39|UBX domain protein Ubx3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 410
Score = 25.0 bits (52), Expect = 6.8
Identities = 11/36 (30%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Frame = +2
Query: 260 PLTGRGDPLRNDPTYDY-EPPILERVHYWADDTRVE 364
P+T G P N PT E P+ +++W + V+
Sbjct: 191 PVTQSGPPRENPPTESQPEKPLRRTLYFWRNGFSVD 226
>SPAC2F3.14c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 331
Score = 24.6 bits (51), Expect = 9.0
Identities = 12/50 (24%), Positives = 22/50 (44%)
Frame = +2
Query: 185 TNAAEAHSSSLISNFSPRMDFDQWKPLTGRGDPLRNDPTYDYEPPILERV 334
T E +S IS +P+ F+ + +N+PT + P+L +
Sbjct: 48 TQVGEDADNSFISENTPKNTFESTQTYENLESISKNEPTSEASKPLLNEL 97
>SPAPYUG7.03c |mid2||anillin homologue Mid2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 704
Score = 24.6 bits (51), Expect = 9.0
Identities = 15/63 (23%), Positives = 27/63 (42%)
Frame = +2
Query: 146 MLFIVSSVVALGSTNAAEAHSSSLISNFSPRMDFDQWKPLTGRGDPLRNDPTYDYEPPIL 325
M+ + + ++ S +E SS PR+ F R D R+D ++YE P+
Sbjct: 233 MVGLGEGINSIASFGFSEDSSSFQDIKTPPRLSFADENRENCRTDIYRSDSIHEYEEPLT 292
Query: 326 ERV 334
+
Sbjct: 293 SSI 295
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,030,662
Number of Sequences: 5004
Number of extensions: 39659
Number of successful extensions: 140
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -