Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS330A08f
(521 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0365 - 22384981-22385930,22386298-22386364,22386486-22386545 29 3.0
05_01_0184 - 1298640-1298751,1298936-1299027,1299695-1299910,130... 28 4.0
05_01_0182 + 1284900-1285469,1285604-1286612,1286698-1287107 28 4.0
04_04_1078 - 30655212-30655289,30655614-30655811,30655916-306560... 28 4.0
04_04_0057 + 22410167-22411330 28 4.0
02_04_0109 + 19812544-19814474,19814574-19814607 28 5.2
02_02_0459 + 10513611-10514015 28 5.2
02_05_1094 + 34060262-34060385,34061256-34061428,34061505-340616... 27 6.9
06_01_0130 - 1010901-1011932,1012627-1012913,1013516-1013606 27 9.1
04_01_0610 - 7997406-7998047,7998379-7998426,8000719-8001143,800... 27 9.1
>02_04_0365 - 22384981-22385930,22386298-22386364,22386486-22386545
Length = 358
Score = 28.7 bits (61), Expect = 3.0
Identities = 14/33 (42%), Positives = 17/33 (51%)
Frame = +2
Query: 407 GVSSRKPSIAATHPPQQTRRPLIRPTTPKYEDF 505
G +S P +A+ HPP RR IR EDF
Sbjct: 71 GANSGSPILASPHPPLPRRRAEIRTREGDPEDF 103
>05_01_0184 -
1298640-1298751,1298936-1299027,1299695-1299910,
1300045-1300614
Length = 329
Score = 28.3 bits (60), Expect = 4.0
Identities = 18/56 (32%), Positives = 23/56 (41%), Gaps = 2/56 (3%)
Frame = +2
Query: 356 RVERDHYPERKSEILMLG--VSSRKPSIAATHPPQQTRRPLIRPTTPKYEDFAYNL 517
RV P R + +G + R+P AT PPQ T + P PK A L
Sbjct: 24 RVAGSSLPRRPTPTTAIGRVAAGRRPPAPATGPPQGTPAMSLAPPPPKASPSAARL 79
>05_01_0182 + 1284900-1285469,1285604-1286612,1286698-1287107
Length = 662
Score = 28.3 bits (60), Expect = 4.0
Identities = 18/56 (32%), Positives = 23/56 (41%), Gaps = 2/56 (3%)
Frame = +2
Query: 356 RVERDHYPERKSEILMLG--VSSRKPSIAATHPPQQTRRPLIRPTTPKYEDFAYNL 517
RV P R + +G + R+P AT PPQ T + P PK A L
Sbjct: 24 RVAGSSLPRRPTPTTAIGRVAAGRRPPAPATGPPQGTPAMSLAPPPPKASPSAARL 79
>04_04_1078 -
30655212-30655289,30655614-30655811,30655916-30656086,
30656172-30656252,30656464-30656565,30656671-30656779,
30656900-30656965,30657566-30657630,30658386-30658475,
30658952-30659123,30659831-30659943,30660046-30660219,
30660300-30660347,30662041-30662205
Length = 543
Score = 28.3 bits (60), Expect = 4.0
Identities = 18/41 (43%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
Frame = -1
Query: 332 LFRE*EVHNHRSDRFLKGLHDQLK---VSIDQNPFGEKNSR 219
L RE E R D + L DQL+ V +D+NP G+K SR
Sbjct: 50 LVREYESEISRLDDKVNQLRDQLRKAGVHLDENPTGDKVSR 90
>04_04_0057 + 22410167-22411330
Length = 387
Score = 28.3 bits (60), Expect = 4.0
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = -3
Query: 159 TMNNITQLSLFQFIFVLYHGAYIKSLALADLSTLRA 52
TM+ + +S+ F F+L+ AYI LA+ RA
Sbjct: 48 TMSTVITVSISVFFFLLFFCAYINQCRLAEAGDARA 83
>02_04_0109 + 19812544-19814474,19814574-19814607
Length = 654
Score = 27.9 bits (59), Expect = 5.2
Identities = 12/27 (44%), Positives = 20/27 (74%), Gaps = 1/27 (3%)
Frame = +2
Query: 239 MDFDQWKPLTGRGDPLRNDPTYD-YEP 316
++ D+W+ TG+G+P R+D +D YEP
Sbjct: 176 IEHDRWEE-TGKGNPGRDDDDFDRYEP 201
>02_02_0459 + 10513611-10514015
Length = 134
Score = 27.9 bits (59), Expect = 5.2
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +2
Query: 401 MLGVSSRKPSIAATHPPQQTRRPLIRPTTPKYED 502
M G+S +PSI++T PP Q R PK+ D
Sbjct: 1 MCGISLGEPSISSTRPPLQVGR---HKKVPKFPD 31
>02_05_1094 +
34060262-34060385,34061256-34061428,34061505-34061686,
34061789-34062073,34062160-34062218,34062349-34062385,
34062485-34062556,34063613-34063937,34064027-34064410
Length = 546
Score = 27.5 bits (58), Expect = 6.9
Identities = 8/21 (38%), Positives = 14/21 (66%)
Frame = -1
Query: 479 VLLAVSWFVVAGVLLLCSVFV 417
+L+ + W +V G +LC VF+
Sbjct: 287 ILVIIGWILVTGTFILCGVFL 307
>06_01_0130 - 1010901-1011932,1012627-1012913,1013516-1013606
Length = 469
Score = 27.1 bits (57), Expect = 9.1
Identities = 21/74 (28%), Positives = 31/74 (41%)
Frame = +2
Query: 143 VMLFIVSSVVALGSTNAAEAHSSSLISNFSPRMDFDQWKPLTGRGDPLRNDPTYDYEPPI 322
V L ++ VV GST+ A+ HS+ SP + W PL+ P + P P
Sbjct: 9 VPLLLLLLVVLSGSTSLAD-HSA-----VSPHPNVTNWVPLSRPYGPCSSSPAKGRAAPS 62
Query: 323 LERVHYWADDTRVE 364
W+D R +
Sbjct: 63 TVDGMLWSDQHRAD 76
>04_01_0610 -
7997406-7998047,7998379-7998426,8000719-8001143,
8002301-8002589
Length = 467
Score = 27.1 bits (57), Expect = 9.1
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = +2
Query: 377 PERKSEILMLGVSSRKPSIAATHPPQQTRRPLIRPTTPK 493
P+ + +L+L + P A PP+ RP RP TP+
Sbjct: 378 PDSRRLLLLLLLPPPGPPPLAQAPPRHPPRPWCRPHTPR 416
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,779,800
Number of Sequences: 37544
Number of extensions: 240464
Number of successful extensions: 613
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 578
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 611
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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