Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS330A03f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3G9.08 |png1||ING family homolog Png1|Schizosaccharomyces po...    30   0.18 
SPAC12G12.09 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    26   3.9  
SPAC1486.03c |||RNA-binding splicing factor|Schizosaccharomyces ...    25   5.2  
SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyc...    25   5.2  
SPBC26H8.12 |||cytochrome c heme lyase|Schizosaccharomyces pombe...    25   6.8  
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    25   6.8  
SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein lig...    25   9.0  

>SPAC3G9.08 |png1||ING family homolog Png1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 283

 Score = 30.3 bits (65), Expect = 0.18
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -3

Query: 177 KVCFSEHSSYSHMFVCDHASC 115
           K CF +  SY  M  CD+A+C
Sbjct: 229 KYCFCQQGSYGQMVACDNANC 249


>SPAC12G12.09 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 977

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 16/57 (28%), Positives = 25/57 (43%)
 Frame = -3

Query: 507 AVPQRLLQDRERRTDQSKXSFRSVRSAKTTEPSHSLDSTKTRHGSLRYDFKSSASLE 337
           A  +R+ Q + + +      FR+V   +   P  S++S K   G      KSS S E
Sbjct: 135 AFHERVDQGKNKSSTTKYQEFRTVADYREFSPGQSVNSLKPNSGDEVPSTKSSTSSE 191


>SPAC1486.03c |||RNA-binding splicing factor|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 797

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 14/28 (50%), Positives = 17/28 (60%)
 Frame = -1

Query: 377 VASDMTLRVPPRWSRSLIDASLITTKSI 294
           ++ DM     PR+  SLIDASL  TK I
Sbjct: 205 ISKDMGSYNLPRFLASLIDASLNDTKEI 232


>SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 781

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = -3

Query: 426 KTTEPSHSLDSTKTRHGSLRYDFKSSASLEQVSYRCLVNN 307
           +    SH+L STK+ +G+ +     SA L   +    +NN
Sbjct: 204 RANSASHNLGSTKSPNGNAKESLSRSAELPSKAKPMEINN 243


>SPBC26H8.12 |||cytochrome c heme lyase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 377

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
 Frame = +2

Query: 107 YIKQDAWSQTNMWE*LECSE--KQTLLKNEGKQNK 205
           ++ + AWS+   WE  E  E  +  LL+ EG  NK
Sbjct: 254 FLNEGAWSEIKAWE-REAGENTEPKLLRFEGNANK 287


>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1841

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 20/79 (25%), Positives = 40/79 (50%), Gaps = 7/79 (8%)
 Frame = -3

Query: 471  RTDQSKXSFRSVRSAKTTEP-SHSLDSTKTRHGSLR------YDFKSSASLEQVSYRCLV 313
            ++D +K   R  + +++T+  S +L+ T T+ G +       Y+++   S  QVS   ++
Sbjct: 1469 KSDLAKVRPRYPKGSESTDGLSDALNITPTKKGEVSSKAKKGYNYEKRRSGRQVSDSYVL 1528

Query: 312  NNNKVDKRKVRYRSSVTYS 256
            N N  +K      +S T+S
Sbjct: 1529 NKNSKNKSNKGRSASYTFS 1547


>SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein ligase
           E3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1647

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 20/62 (32%), Positives = 30/62 (48%)
 Frame = -3

Query: 519 RRRTAVPQRLLQDRERRTDQSKXSFRSVRSAKTTEPSHSLDSTKTRHGSLRYDFKSSASL 340
           + R    + L   ++RR   +K   +   SAK +EP  S      RH ++R+DF  S  L
Sbjct: 38  KHRLNTSEELPFTKKRRA--TKHFLKMEVSAKISEPPSSKSVEFGRHLNMRHDF--SELL 93

Query: 339 EQ 334
           EQ
Sbjct: 94  EQ 95


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,838,321
Number of Sequences: 5004
Number of extensions: 32411
Number of successful extensions: 99
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 99
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)