Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS330A03f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0122 + 954356-954491,954877-955030,955141-955231,955732-95...    31   0.42 
08_02_1393 - 26706198-26706592,26707055-26707301,26707407-267082...    31   0.74 
08_02_0545 + 18470313-18470669,18470901-18471095,18471183-184713...    29   3.0  
02_05_1168 + 34651143-34651424,34651983-34652138,34652239-346523...    28   4.0  
01_01_0639 + 4825703-4826155,4826344-4826559,4826683-4827411           27   6.9  
02_04_0639 + 24662786-24663451                                         27   9.1  
01_06_0184 - 27282021-27282313,27284238-27285374,27285524-27285617     27   9.1  

>03_01_0122 +
           954356-954491,954877-955030,955141-955231,955732-955806,
           955884-955972,956084-956202,956338-956478,956817-956893,
           958615-959217
          Length = 494

 Score = 31.5 bits (68), Expect = 0.42
 Identities = 18/58 (31%), Positives = 32/58 (55%)
 Frame = -1

Query: 506 QFHNDYFKTEREERISLNXRSVQFVQRKRPNRVIRSIRLRRGTVASDMTLRVPPRWSR 333
           +F++ YF+ +R+E +     + + V+    + V R IRLR G   S+  +R P + SR
Sbjct: 287 EFYSSYFEMDRDESLGTQPLTGRRVRADTRHPVYRGIRLRSGKWVSE--IREPGKSSR 342


>08_02_1393 -
           26706198-26706592,26707055-26707301,26707407-26708249,
           26708420-26709091
          Length = 718

 Score = 30.7 bits (66), Expect = 0.74
 Identities = 12/35 (34%), Positives = 24/35 (68%)
 Frame = -3

Query: 408 HSLDSTKTRHGSLRYDFKSSASLEQVSYRCLVNNN 304
           H+L    + H ++ Y F S+A+LEQV++R + +++
Sbjct: 357 HNLFPALSEHDAMMYLFHSNANLEQVTFRAMCDHD 391


>08_02_0545 +
           18470313-18470669,18470901-18471095,18471183-18471362,
           18471462-18471656,18472081-18472179,18472271-18472780,
           18472896-18473225
          Length = 621

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 19/49 (38%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
 Frame = +3

Query: 162 RKSKLY*KTKE-NKTKSINNHKF**NRTILNSGSKLRNCGNVPSSYRLC 305
           RK K +    E  KT+ +NN  F   RTI NS   L   G V +  +LC
Sbjct: 291 RKDKAFEALNELRKTRDLNNTSFHQYRTISNSVRDLSARGEVEAVQQLC 339


>02_05_1168 +
           34651143-34651424,34651983-34652138,34652239-34652346,
           34652778-34652888,34652985-34654421,34654598-34654852
          Length = 782

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = +3

Query: 258 SKLRNCGNVPSSYRLCCY*RGIDKRPA 338
           SKL +C N P+SY  C   R + K+PA
Sbjct: 716 SKLPSCNNQPNSYLACL--RAVKKQPA 740


>01_01_0639 + 4825703-4826155,4826344-4826559,4826683-4827411
          Length = 465

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -3

Query: 402 LDSTKTRHGSLRYDFKSSASLEQVSY 325
           +D T++ HG   Y  + SAS+E  SY
Sbjct: 228 MDDTRSEHGVAAYSRRLSASIESSSY 253


>02_04_0639 + 24662786-24663451
          Length = 221

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = -1

Query: 392 LRRGTVASDMTLRVPPRWSRS 330
           LRRG  A D+TL  P R+ RS
Sbjct: 148 LRRGDAAVDVTLTTPARYCRS 168


>01_06_0184 - 27282021-27282313,27284238-27285374,27285524-27285617
          Length = 507

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = -3

Query: 456 KXSFRSVRSAKTTEPSHSLDSTKTRHGSLRYDF 358
           K S  S+ +    E +H +D+TK  HG L+Y F
Sbjct: 317 KSSAASIATVSRPEEAHDVDATK--HGLLQYGF 347


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,232,033
Number of Sequences: 37544
Number of extensions: 186167
Number of successful extensions: 470
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 461
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 470
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)