Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS330A03f
(521 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z70034-7|CAA93856.1| 855|Caenorhabditis elegans Hypothetical pr... 31 0.66
Z81084-5|CAI79227.1| 447|Caenorhabditis elegans Hypothetical pr... 29 2.0
Z81084-4|CAB03109.2| 476|Caenorhabditis elegans Hypothetical pr... 29 2.0
Z49937-1|CAA90184.2| 670|Caenorhabditis elegans Hypothetical pr... 29 2.7
Z29094-7|CAA82342.2| 453|Caenorhabditis elegans Hypothetical pr... 29 2.7
Z54216-4|CAA90947.1| 421|Caenorhabditis elegans Hypothetical pr... 28 3.5
AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 prote... 28 4.7
AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 prote... 28 4.7
U00044-6|AAA50679.2| 670|Caenorhabditis elegans Bard homolog (t... 27 6.2
AL110485-5|CAB60375.1| 1002|Caenorhabditis elegans Hypothetical ... 27 6.2
>Z70034-7|CAA93856.1| 855|Caenorhabditis elegans Hypothetical
protein C18E9.7 protein.
Length = 855
Score = 30.7 bits (66), Expect = 0.66
Identities = 18/53 (33%), Positives = 27/53 (50%)
Frame = -3
Query: 402 LDSTKTRHGSLRYDFKSSASLEQVSYRCLVNNNKVDKRKVRYRSSVTYSLSLE 244
+D+T T G+ YD+ SSA EQ S + L N + + +S YS +E
Sbjct: 138 IDTTFTTQGTANYDYSSSA--EQYSVKTLPPNFNIGLQTTTEMTSYEYSREVE 188
>Z81084-5|CAI79227.1| 447|Caenorhabditis elegans Hypothetical
protein F46A9.3b protein.
Length = 447
Score = 29.1 bits (62), Expect = 2.0
Identities = 17/59 (28%), Positives = 29/59 (49%)
Frame = -3
Query: 423 TTEPSHSLDSTKTRHGSLRYDFKSSASLEQVSYRCLVNNNKVDKRKVRYRSSVTYSLSL 247
T E ++S R LR ++S ++ RCL N K D+ + ++S+ YSL +
Sbjct: 57 TLEKRLCIESLLNRDNRLRLT-RASDVAAAIAERCLTENVKDDRMQWSFKSAALYSLGI 114
>Z81084-4|CAB03109.2| 476|Caenorhabditis elegans Hypothetical
protein F46A9.3a protein.
Length = 476
Score = 29.1 bits (62), Expect = 2.0
Identities = 17/59 (28%), Positives = 29/59 (49%)
Frame = -3
Query: 423 TTEPSHSLDSTKTRHGSLRYDFKSSASLEQVSYRCLVNNNKVDKRKVRYRSSVTYSLSL 247
T E ++S R LR ++S ++ RCL N K D+ + ++S+ YSL +
Sbjct: 86 TLEKRLCIESLLNRDNRLRLT-RASDVAAAIAERCLTENVKDDRMQWSFKSAALYSLGI 143
>Z49937-1|CAA90184.2| 670|Caenorhabditis elegans Hypothetical
protein F14F3.2 protein.
Length = 670
Score = 28.7 bits (61), Expect = 2.7
Identities = 20/75 (26%), Positives = 29/75 (38%)
Frame = -3
Query: 486 QDRERRTDQSKXSFRSVRSAKTTEPSHSLDSTKTRHGSLRYDFKSSASLEQVSYRCLVNN 307
+D E R D +RS S + H LD R + SS S + CL N
Sbjct: 508 RDSEDRIDGGGARWRSNSSDRRNSNDHKLDKKVERRQDSMMESSSSLSRSSQNPSCL-NR 566
Query: 306 NKVDKRKVRYRSSVT 262
+V R ++ +T
Sbjct: 567 EEVKTRVIQQSEKIT 581
>Z29094-7|CAA82342.2| 453|Caenorhabditis elegans Hypothetical
protein C07A9.8 protein.
Length = 453
Score = 28.7 bits (61), Expect = 2.7
Identities = 14/26 (53%), Positives = 19/26 (73%)
Frame = -3
Query: 402 LDSTKTRHGSLRYDFKSSASLEQVSY 325
LDS TR SL+Y F S+A +E++SY
Sbjct: 388 LDSDDTR--SLKYHFGSAAQMEEISY 411
>Z54216-4|CAA90947.1| 421|Caenorhabditis elegans Hypothetical
protein T24H10.5 protein.
Length = 421
Score = 28.3 bits (60), Expect = 3.5
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = -1
Query: 491 YFKTEREERISLNXRSVQFVQRKRPNRVIRSI 396
+FK +EER++ S+QF++ PN V R I
Sbjct: 146 FFKKVQEERLT-EKSSIQFLEEVNPNSVTRDI 176
>AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 protein
protein.
Length = 18519
Score = 27.9 bits (59), Expect = 4.7
Identities = 14/45 (31%), Positives = 24/45 (53%)
Frame = -1
Query: 428 RKRPNRVIRSIRLRRGTVASDMTLRVPPRWSRSLIDASLITTKSI 294
+KR R I+ + RR A +T +PPR+ + L D I +++
Sbjct: 12413 KKRKKRRIKRVVERRNPNAPRLTQLIPPRFDKILSDHDAIEGENV 12457
>AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 protein
protein.
Length = 18534
Score = 27.9 bits (59), Expect = 4.7
Identities = 14/45 (31%), Positives = 24/45 (53%)
Frame = -1
Query: 428 RKRPNRVIRSIRLRRGTVASDMTLRVPPRWSRSLIDASLITTKSI 294
+KR R I+ + RR A +T +PPR+ + L D I +++
Sbjct: 12413 KKRKKRRIKRVVERRNPNAPRLTQLIPPRFDKILSDHDAIEGENV 12457
>U00044-6|AAA50679.2| 670|Caenorhabditis elegans Bard homolog
(tumor suppressorgene bard1) protein 1 protein.
Length = 670
Score = 27.5 bits (58), Expect = 6.2
Identities = 15/45 (33%), Positives = 19/45 (42%)
Frame = -1
Query: 512 ELQFHNDYFKTEREERISLNXRSVQFVQRKRPNRVIRSIRLRRGT 378
EL +DY K R S S V ++P R + I RR T
Sbjct: 163 ELDIFHDYSKEASPTRNSTKRPSTVSVHERKPKRTLTEILQRRST 207
>AL110485-5|CAB60375.1| 1002|Caenorhabditis elegans Hypothetical
protein Y46G5A.6 protein.
Length = 1002
Score = 27.5 bits (58), Expect = 6.2
Identities = 17/56 (30%), Positives = 30/56 (53%)
Frame = -1
Query: 518 EEELQFHNDYFKTEREERISLNXRSVQFVQRKRPNRVIRSIRLRRGTVASDMTLRV 351
E+E + ++ ++EE S + + QRK P R++ S+ RR VASD + +
Sbjct: 766 EKERELLAVSYEVKKEEPESNDEDDNRKDQRK-PRRIVESVEDRRNVVASDTQVAI 820
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,137,865
Number of Sequences: 27780
Number of extensions: 179976
Number of successful extensions: 612
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 574
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 609
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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