Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS330A02f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1361 - 36663859-36663985,36664353-36664543,36664746-366650...    58   6e-09
03_06_0026 - 31118997-31119113,31119700-31119900,31120032-311202...    46   1e-05
07_03_1425 + 26489446-26491425                                         28   5.2  
02_01_0426 + 3113443-3114220,3119557-3119693,3119831-3120817           28   5.2  

>01_06_1361 -
           36663859-36663985,36664353-36664543,36664746-36665009,
           36665215-36665373,36665476-36665679,36665765-36665983,
           36666191-36666322,36666406-36666523,36666670-36666854,
           36667263-36667355,36667819-36668008,36668500-36668585,
           36668671-36668847,36669141-36669320,36669423-36669623
          Length = 841

 Score = 57.6 bits (133), Expect = 6e-09
 Identities = 21/47 (44%), Positives = 33/47 (70%)
 Frame = +2

Query: 380 PRDYYFALAHTVKDHLVSRWIRTQQYYYENDPKRVYYLSLEYYMGRS 520
           P   +++ A +V+DHLV RW  T  ++++ DPK+ YYLS+EY  GR+
Sbjct: 50  PEQAFYSTAESVRDHLVQRWNETYLHFHKTDPKQTYYLSMEYLQGRA 96


>03_06_0026 -
           31118997-31119113,31119700-31119900,31120032-31120218,
           31120339-31120415,31120738-31120815,31120858-31120974,
           31121047-31121175,31121327-31121479,31121589-31122044,
           31122122-31122239,31122385-31122575,31123140-31123415,
           31123524-31123700,31124040-31124141,31124227-31124459,
           31125563-31125764
          Length = 937

 Score = 46.4 bits (105), Expect = 1e-05
 Identities = 22/61 (36%), Positives = 31/61 (50%)
 Frame = +2

Query: 338 HVHYTLVKDRNVATPRDYYFALAHTVKDHLVSRWIRTQQYYYENDPKRVYYLSLEYYMGR 517
           H  +T V      +P   Y A A +V D L+  W  T  YY   + K+ YYLS+E+  GR
Sbjct: 88  HAEFTPVFSPEHFSPLKAYHATAKSVLDTLIMNWNATYDYYDRTNVKQAYYLSMEFLQGR 147

Query: 518 S 520
           +
Sbjct: 148 A 148


>07_03_1425 + 26489446-26491425
          Length = 659

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 12/20 (60%), Positives = 15/20 (75%)
 Frame = +2

Query: 38 PTQTVVFATVKITNNQCDLF 97
          PT T+VFATV +TN   D+F
Sbjct: 3  PTGTIVFATVGVTNFGFDVF 22


>02_01_0426 + 3113443-3114220,3119557-3119693,3119831-3120817
          Length = 633

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 12/19 (63%), Positives = 12/19 (63%)
 Frame = +1

Query: 325 GVQSSCPLHFSERSKCCDP 381
           GVQSS P  FS   K CDP
Sbjct: 563 GVQSSYPYDFSGNPKLCDP 581


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,324,591
Number of Sequences: 37544
Number of extensions: 225193
Number of successful extensions: 503
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 498
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 503
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)