Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS330A01f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC30B4.07c |tfb4||transcription factor TFIIH complex subunit T...    25   6.8  
SPBC13G1.02 |||mannose-1-phosphate guanyltransferase |Schizosacc...    25   9.0  
SPBC19C2.06c |mug124||sequence orphan|Schizosaccharomyces pombe|...    25   9.0  

>SPBC30B4.07c |tfb4||transcription factor TFIIH complex subunit Tfb4
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 297

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = +1

Query: 49  LKYGDKCFVIFSMYCIYRFVCSTC 120
           L  G  C V  S++C  R  CSTC
Sbjct: 259 LDIGFVCSVCLSIFCEPRVHCSTC 282


>SPBC13G1.02 |||mannose-1-phosphate guanyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 414

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -1

Query: 338 DEIIEVIEKTIPEVEEMLRSQD 273
           DEI +  E+ + EVE+ LRS D
Sbjct: 194 DEIKKAYERRLEEVEKQLRSLD 215


>SPBC19C2.06c |mug124||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 145

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +3

Query: 102 VCMFDMWKAFSCNIIC 149
           VC+   W AFSC+++C
Sbjct: 78  VCVALHWIAFSCSVMC 93


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,986,993
Number of Sequences: 5004
Number of extensions: 37765
Number of successful extensions: 73
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 73
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)