Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS330A01f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0201 - 1347868-1347925,1348040-1348135,1348447-1348523,134...    28   4.0  
11_01_0682 - 5575297-5575308,5575391-5575516,5575779-5575885,557...    27   6.9  
01_01_0932 - 7363147-7363478,7364336-7364423,7364515-7364604,736...    27   6.9  
01_01_1208 + 9733010-9733114,9733920-9733979,9735254-9736280,973...    27   9.1  
01_01_0607 + 4508225-4508282,4508391-4508452,4508534-4508614,450...    27   9.1  

>02_01_0201 -
           1347868-1347925,1348040-1348135,1348447-1348523,
           1349385-1349453,1349576-1349629,1350295-1350350,
           1350487-1350694,1350978-1351066,1351163-1351187
          Length = 243

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = +1

Query: 58  GDKCFVIFSMYCIYRFVCSTCG 123
           G  C V  S++C Y   CSTCG
Sbjct: 204 GYVCSVCLSIFCKYHKKCSTCG 225


>11_01_0682 -
           5575297-5575308,5575391-5575516,5575779-5575885,
           5575911-5576013,5576122-5576187,5576378-5576461,
           5577448-5577522,5577615-5577668,5577752-5577895,
           5578632-5578685,5578877-5578981,5579076-5579173,
           5579660-5579729,5580444-5580566,5580647-5580727,
           5580996-5581476,5581684-5581816,5582550-5582598,
           5582704-5582892,5583642-5583703,5583762-5585316
          Length = 1256

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = +2

Query: 482 LQAPPPWQFPLW 517
           L  PPPW +PLW
Sbjct: 688 LPKPPPWAYPLW 699


>01_01_0932 -
           7363147-7363478,7364336-7364423,7364515-7364604,
           7364709-7364813
          Length = 204

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 12/37 (32%), Positives = 24/37 (64%)
 Frame = -1

Query: 374 DDMKTEQGGGVDDEIIEVIEKTIPEVEEMLRSQDILS 264
           DD KTE    ++ +++EV+E + PE++ +L+ +   S
Sbjct: 43  DDKKTE----LEPKVVEVVESSPPEIKALLKDKKTAS 75


>01_01_1208 +
           9733010-9733114,9733920-9733979,9735254-9736280,
           9736332-9736621
          Length = 493

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 10/26 (38%), Positives = 19/26 (73%)
 Frame = -1

Query: 380 VTDDMKTEQGGGVDDEIIEVIEKTIP 303
           +T+D+KTE  G V ++I++  +K +P
Sbjct: 110 MTEDVKTEPDGSVPEKILKKPDKILP 135


>01_01_0607 +
           4508225-4508282,4508391-4508452,4508534-4508614,
           4508930-4508993,4509750-4509817,4510277-4510378,
           4510525-4510614,4510759-4510833,4510935-4510967,
           4511544-4511618,4511784-4511843,4512006-4512098
          Length = 286

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = -1

Query: 353 GGGVDDEIIEVIEKTIPEVEEML 285
           GGGV D+I E ++K   EV +M+
Sbjct: 54  GGGVIDQIEEAVKKATMEVNQMI 76


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,508,624
Number of Sequences: 37544
Number of extensions: 235595
Number of successful extensions: 519
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 511
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 519
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)