Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS330A01f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   3.3  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    22   4.4  
L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein pro...    22   4.4  
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          22   4.4  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      22   4.4  
DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.              21   5.8  
AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier...    21   5.8  

>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 13/40 (32%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = -1

Query: 374 DDMKTEQGGGVDDEIIEVIEKTIPEVEEM-LRSQDILSSP 258
           DD+KTE   G++D+I    E+     +++ L S D++  P
Sbjct: 302 DDIKTELSTGMNDDIPPETEEEEENDKKLDLDSIDMMQLP 341


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = +2

Query: 83  PCIVYIGLYVR 115
           PCIV +G+Y R
Sbjct: 204 PCIVMLGIYCR 214


>L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein
           protein.
          Length = 74

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 9/25 (36%), Positives = 11/25 (44%)
 Frame = +2

Query: 404 RHPEPRHLTYMLKLFPNLKAQHCSH 478
           R     HL   ++L    K  HCSH
Sbjct: 18  RFTRDHHLKTHMRLHTGEKPYHCSH 42


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 8/11 (72%), Positives = 10/11 (90%)
 Frame = -2

Query: 118 MSNIQTYIYNT 86
           M+NI+TYI NT
Sbjct: 194 MNNIETYIVNT 204


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 8/11 (72%), Positives = 10/11 (90%)
 Frame = -2

Query: 118 MSNIQTYIYNT 86
           M+NI+TYI NT
Sbjct: 194 MNNIETYIVNT 204


>DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.
          Length = 120

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = +3

Query: 384 TIKHCL*GTLNPDT 425
           T+K+C  GT NP T
Sbjct: 87  TVKYCPKGTKNPGT 100


>AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier
           protein JHBP-1 protein.
          Length = 253

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 7/24 (29%), Positives = 16/24 (66%)
 Frame = +2

Query: 212 RLYCV*TTLKQKDSSVDWTGCLVN 283
           +LY +   L+ K+ ++DW  C+++
Sbjct: 94  KLYGLTKNLEIKNYNIDWDKCILS 117


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 137,223
Number of Sequences: 438
Number of extensions: 2829
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)