Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS329H12f
(521 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC006671-6|AAF39916.1| 411|Caenorhabditis elegans Hypothetical ... 31 0.66
Z29560-5|CAA82664.1| 1385|Caenorhabditis elegans Hypothetical pr... 29 2.7
Z54284-3|CAA91063.1| 666|Caenorhabditis elegans Hypothetical pr... 28 3.5
Z81542-10|CAB04419.4| 411|Caenorhabditis elegans Hypothetical p... 28 4.7
U39999-14|ABF71722.1| 1483|Caenorhabditis elegans Hypothetical p... 28 4.7
AM773423-1|CAO78927.1| 1473|Caenorhabditis elegans AGRin (synapt... 28 4.7
Z81143-5|CAB03518.2| 370|Caenorhabditis elegans Hypothetical pr... 27 6.2
U55374-6|AAM69092.1| 1926|Caenorhabditis elegans Uncoordinated p... 27 6.2
U55374-5|AAP82640.2| 2027|Caenorhabditis elegans Uncoordinated p... 27 6.2
AY264781-1|AAP13107.1| 2027|Caenorhabditis elegans high voltage ... 27 6.2
Z68296-5|CAD59142.2| 1677|Caenorhabditis elegans Hypothetical pr... 27 8.1
Z68296-4|CAA92591.3| 1838|Caenorhabditis elegans Hypothetical pr... 27 8.1
U88179-1|AAB52661.3| 216|Caenorhabditis elegans Hypothetical pr... 27 8.1
U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical pr... 27 8.1
U28741-7|AAO38645.1| 721|Caenorhabditis elegans Synapse defecti... 27 8.1
U28741-5|AAO38644.1| 987|Caenorhabditis elegans Synapse defecti... 27 8.1
AL110490-7|CAD59175.1| 533|Caenorhabditis elegans Hypothetical ... 27 8.1
AL110490-6|CAB54442.2| 687|Caenorhabditis elegans Hypothetical ... 27 8.1
AC006669-1|AAF39909.1| 1203|Caenorhabditis elegans Hypothetical ... 27 8.1
>AC006671-6|AAF39916.1| 411|Caenorhabditis elegans Hypothetical
protein K08A2.1 protein.
Length = 411
Score = 30.7 bits (66), Expect = 0.66
Identities = 15/44 (34%), Positives = 22/44 (50%)
Frame = +2
Query: 341 VPSGPQLSTGASARTLPSPAARCIPPPRLRTGLRGNIAAQDPVI 472
VP+ P +++ + A PSP A PPPRL +PV+
Sbjct: 262 VPTAPDVTSESPATPQPSPPAVTPPPPRLLPAATTESHQTEPVL 305
>Z29560-5|CAA82664.1| 1385|Caenorhabditis elegans Hypothetical protein
K03H1.5 protein.
Length = 1385
Score = 28.7 bits (61), Expect = 2.7
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +3
Query: 249 GLLGDGNNEPYDDFRLPNGKI 311
GLLG NN+P DD P+G +
Sbjct: 1036 GLLGTYNNDPADDLTTPSGTV 1056
>Z54284-3|CAA91063.1| 666|Caenorhabditis elegans Hypothetical
protein D2085.3 protein.
Length = 666
Score = 28.3 bits (60), Expect = 3.5
Identities = 18/80 (22%), Positives = 32/80 (40%)
Frame = +3
Query: 282 DDFRLPNGKICTSESEFGNAYRLARSCPQVQAPEHSHHQLHDASLPPACEQVFGGISPLR 461
DD +PNG ES GN + P +Q + +++ + Q G +
Sbjct: 384 DDVVIPNGAHIPKESIIGNGVMYPKELPNIQNTAIFKNAINEETFEKLSSQPIGNVH--- 440
Query: 462 TLSLFMDMSPFRQACIHAVT 521
+S F + PF + ++ T
Sbjct: 441 -VSKFRNGGPFWRRSVNGKT 459
>Z81542-10|CAB04419.4| 411|Caenorhabditis elegans Hypothetical
protein F49A5.7 protein.
Length = 411
Score = 27.9 bits (59), Expect = 4.7
Identities = 17/57 (29%), Positives = 27/57 (47%)
Frame = +1
Query: 262 TVTTSLTMTSGYLMERSALRKASSVTRTVWPAAVHRCKRPNTPITSCTMHPSPPPAN 432
T +T+ +S L+ S+ + SS TRTV + +T I T +P P+N
Sbjct: 88 TFSTNEASSSTKLLSTSSTAEISSTTRTVSRSIKPETSTASTTIRPLTTTTTPAPSN 144
>U39999-14|ABF71722.1| 1483|Caenorhabditis elegans Hypothetical
protein F41G3.12 protein.
Length = 1483
Score = 27.9 bits (59), Expect = 4.7
Identities = 12/29 (41%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Frame = -1
Query: 467 QGPERRYSP-EDLFAGGGEGCIVQLVMGV 384
+GP ++ +P EDL G GE C+V + G+
Sbjct: 209 KGPCKKRNPCEDLRCGPGEDCVVNQINGI 237
>AM773423-1|CAO78927.1| 1473|Caenorhabditis elegans AGRin (synaptic
protein) homologfamily member protein.
Length = 1473
Score = 27.9 bits (59), Expect = 4.7
Identities = 12/29 (41%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Frame = -1
Query: 467 QGPERRYSP-EDLFAGGGEGCIVQLVMGV 384
+GP ++ +P EDL G GE C+V + G+
Sbjct: 217 KGPCKKRNPCEDLRCGPGEDCVVNQINGI 245
>Z81143-5|CAB03518.2| 370|Caenorhabditis elegans Hypothetical
protein ZK265.7 protein.
Length = 370
Score = 27.5 bits (58), Expect = 6.2
Identities = 16/63 (25%), Positives = 28/63 (44%), Gaps = 1/63 (1%)
Frame = +1
Query: 229 STWVNFAVFSETVTTSLTMTSGYLMERSALRKASSVTRT-VWPAAVHRCKRPNTPITSCT 405
S+W F E + T+ T +R+ LRK ++ T T + ++P T T+
Sbjct: 132 SSWKKFTTTEEPLETTTTKRIITTPKRTTLRKTTTTTTTSTTSTSTTTTEKPTTATTTAR 191
Query: 406 MHP 414
+ P
Sbjct: 192 VTP 194
>U55374-6|AAM69092.1| 1926|Caenorhabditis elegans Uncoordinated
protein 2, isoform c protein.
Length = 1926
Score = 27.5 bits (58), Expect = 6.2
Identities = 16/32 (50%), Positives = 18/32 (56%)
Frame = +2
Query: 338 RVPSGPQLSTGASARTLPSPAARCIPPPRLRT 433
R PS P+ + A A PSPA R PPR RT
Sbjct: 1631 RSPSSPRYRSMARASP-PSPAERYGHPPRYRT 1661
>U55374-5|AAP82640.2| 2027|Caenorhabditis elegans Uncoordinated
protein 2, isoform b protein.
Length = 2027
Score = 27.5 bits (58), Expect = 6.2
Identities = 16/32 (50%), Positives = 18/32 (56%)
Frame = +2
Query: 338 RVPSGPQLSTGASARTLPSPAARCIPPPRLRT 433
R PS P+ + A A PSPA R PPR RT
Sbjct: 1732 RSPSSPRYRSMARASP-PSPAERYGHPPRYRT 1762
>AY264781-1|AAP13107.1| 2027|Caenorhabditis elegans high voltage
activated calciumchannel alpha-1 subunit protein.
Length = 2027
Score = 27.5 bits (58), Expect = 6.2
Identities = 16/32 (50%), Positives = 18/32 (56%)
Frame = +2
Query: 338 RVPSGPQLSTGASARTLPSPAARCIPPPRLRT 433
R PS P+ + A A PSPA R PPR RT
Sbjct: 1732 RSPSSPRYRSMARASP-PSPAERYGHPPRYRT 1762
>Z68296-5|CAD59142.2| 1677|Caenorhabditis elegans Hypothetical
protein C46C2.1b protein.
Length = 1677
Score = 27.1 bits (57), Expect = 8.1
Identities = 15/54 (27%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Frame = +1
Query: 301 MERSALRKASSVTRTVWPAAVHRCKRPNTPITSCTMHPSPPP-ANRSSGEYRRS 459
+E+ L K ++ P P TP +S P PPP + ++S E ++S
Sbjct: 731 LEKERLEKKAAAAAAANPNPTPIPPTPATPHSSAQQQPIPPPLSTQTSAEIQQS 784
>Z68296-4|CAA92591.3| 1838|Caenorhabditis elegans Hypothetical
protein C46C2.1a protein.
Length = 1838
Score = 27.1 bits (57), Expect = 8.1
Identities = 15/54 (27%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Frame = +1
Query: 301 MERSALRKASSVTRTVWPAAVHRCKRPNTPITSCTMHPSPPP-ANRSSGEYRRS 459
+E+ L K ++ P P TP +S P PPP + ++S E ++S
Sbjct: 731 LEKERLEKKAAAAAAANPNPTPIPPTPATPHSSAQQQPIPPPLSTQTSAEIQQS 784
>U88179-1|AAB52661.3| 216|Caenorhabditis elegans Hypothetical
protein R57.2 protein.
Length = 216
Score = 27.1 bits (57), Expect = 8.1
Identities = 17/41 (41%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Frame = +3
Query: 291 RLPNGKICTSESEF------GNAYRLARSCPQVQAPEHSHH 395
R P GK TSE + G A +L SC Q+ PE HH
Sbjct: 75 RKPLGKCGTSEVNYQPCTSKGIANKLFLSCCQLYVPEECHH 115
>U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical
protein R04E5.8a protein.
Length = 997
Score = 27.1 bits (57), Expect = 8.1
Identities = 12/30 (40%), Positives = 15/30 (50%)
Frame = +3
Query: 366 QVQAPEHSHHQLHDASLPPACEQVFGGISP 455
QV AP+H H+ PP + GG SP
Sbjct: 109 QVPAPQHGDHEASPPPPPPPRKSRAGGSSP 138
>U28741-7|AAO38645.1| 721|Caenorhabditis elegans Synapse defective
protein 1, isoformc protein.
Length = 721
Score = 27.1 bits (57), Expect = 8.1
Identities = 24/96 (25%), Positives = 43/96 (44%), Gaps = 4/96 (4%)
Frame = +1
Query: 127 LSVNQATESVLAHC-TVSWSSAHLNLRCATLKLTASTWVNFAV--FSE-TVTTSLTMTSG 294
LS VL H TV SS H L L L + + F + FS T++ + M +
Sbjct: 612 LSAKNCLLLVLDHLSTVLCSSPHNGLTPTRLSLIFAPLLFFCLDTFSPYTISPTSKMAAV 671
Query: 295 YLMERSALRKASSVTRTVWPAAVHRCKRPNTPITSC 402
++ + + + ++WP+ V+ ++P T+C
Sbjct: 672 RTLDINQASSSLQMILSIWPSRVNSESGSDSPATTC 707
>U28741-5|AAO38644.1| 987|Caenorhabditis elegans Synapse defective
protein 1, isoforma protein.
Length = 987
Score = 27.1 bits (57), Expect = 8.1
Identities = 24/96 (25%), Positives = 43/96 (44%), Gaps = 4/96 (4%)
Frame = +1
Query: 127 LSVNQATESVLAHC-TVSWSSAHLNLRCATLKLTASTWVNFAV--FSE-TVTTSLTMTSG 294
LS VL H TV SS H L L L + + F + FS T++ + M +
Sbjct: 878 LSAKNCLLLVLDHLSTVLCSSPHNGLTPTRLSLIFAPLLFFCLDTFSPYTISPTSKMAAV 937
Query: 295 YLMERSALRKASSVTRTVWPAAVHRCKRPNTPITSC 402
++ + + + ++WP+ V+ ++P T+C
Sbjct: 938 RTLDINQASSSLQMILSIWPSRVNSESGSDSPATTC 973
>AL110490-7|CAD59175.1| 533|Caenorhabditis elegans Hypothetical
protein Y48B6A.6b protein.
Length = 533
Score = 27.1 bits (57), Expect = 8.1
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +1
Query: 385 TPITSCTMHPSPPPANRSSGEYRRSGP 465
TPI ++ P PPP + RR+GP
Sbjct: 396 TPIRDSSLPPPPPPKPETPLAIRRAGP 422
>AL110490-6|CAB54442.2| 687|Caenorhabditis elegans Hypothetical
protein Y48B6A.6a protein.
Length = 687
Score = 27.1 bits (57), Expect = 8.1
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +1
Query: 385 TPITSCTMHPSPPPANRSSGEYRRSGP 465
TPI ++ P PPP + RR+GP
Sbjct: 396 TPIRDSSLPPPPPPKPETPLAIRRAGP 422
>AC006669-1|AAF39909.1| 1203|Caenorhabditis elegans Hypothetical
protein H43E16.1 protein.
Length = 1203
Score = 27.1 bits (57), Expect = 8.1
Identities = 21/75 (28%), Positives = 37/75 (49%), Gaps = 3/75 (4%)
Frame = +1
Query: 100 SRSSKRMCSLSVNQATESVLAHCT--VSWSSAHLNLRCATLKLTASTWVNF-AVFSETVT 270
S SSK + S Q + S ++ T VS +S + A+L+ T ++ + F+ T T
Sbjct: 398 SSSSKTLTSTQTTQGSPSTVSQTTPGVSSASTGMTTSQASLRSTQNSVTSTPGSFTVTST 457
Query: 271 TSLTMTSGYLMERSA 315
++T T G + S+
Sbjct: 458 PTITSTQGAMASSSS 472
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,940,387
Number of Sequences: 27780
Number of extensions: 291279
Number of successful extensions: 1163
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1087
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1160
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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