Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS329H10f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC31H12.08c |ccr4|SPCC5E4.02c|CCR4-Not complex subunit Ccr4 |S...    27   2.2  
SPAC11D3.18c |||nicotinic acid plasma membrane transporter |Schi...    26   3.9  
SPBC17F3.02 |nak1|orb3, mor4|PAK-related kinase Nak1|Schizosacch...    25   5.2  
SPBC3D6.12 |||U3 snoRNA associted protein Dip2 |Schizosaccharomy...    25   9.0  
SPAC1002.11 |gaa1||GPI-anchor transamidase complex subunit Gaa1 ...    25   9.0  

>SPCC31H12.08c |ccr4|SPCC5E4.02c|CCR4-Not complex subunit Ccr4
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 690

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +1

Query: 235 KNSPKIDPSESLRDSKGIYHEYCIIKIIYDG 327
           +N P   PS+ L+D +  Y EY  I I+  G
Sbjct: 527 RNMPSKIPSDQLKDERPTYPEYLKIPILICG 557


>SPAC11D3.18c |||nicotinic acid plasma membrane transporter
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 498

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = -1

Query: 500 APHFKRTYVFAISCLKGPGL 441
           A  +  TY+ AI C  GPGL
Sbjct: 377 AAKYTATYIIAIGCYIGPGL 396


>SPBC17F3.02 |nak1|orb3, mor4|PAK-related kinase
           Nak1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 652

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = -2

Query: 433 YRTMEKTKVSTSFLGNVSLFNFGRSWVIAAFAIPLRRRILFL 308
           +R ++   +  S  GNV L +FG   V A   I  R+RI F+
Sbjct: 131 HRDIKAANILVSMSGNVKLCDFG---VAAELNINRRKRITFI 169


>SPBC3D6.12 |||U3 snoRNA associted protein Dip2 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 922

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = -2

Query: 385 VSLFNFGRSWVIAAFAIPLRRRILFL*YNIHDRCL 281
           +SLF F   W    ++IPL  RI+F     + R L
Sbjct: 817 LSLFRFIDIWASRKWSIPLVSRIIFFLLRTYHRQL 851


>SPAC1002.11 |gaa1||GPI-anchor transamidase complex subunit Gaa1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 581

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -2

Query: 397 FLGNVSLFNFGRSWVIAAFAIPLR 326
           F+  VS  NF  S+V+A   +PL+
Sbjct: 468 FISVVSTLNFSLSFVVAILLVPLQ 491


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,928,713
Number of Sequences: 5004
Number of extensions: 35573
Number of successful extensions: 62
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 62
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)