Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS329H10f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex det...    24   0.82 
DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    21   5.8  
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    21   5.8  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    21   7.7  

>DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 24.2 bits (50), Expect = 0.82
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +2

Query: 137 HMYIYTYKYLLNSKN*IYCSNLFHKTYIV 223
           + Y Y  KY  N+ N  Y   L++K YI+
Sbjct: 96  YKYNYNNKYNYNNNN--YNKKLYYKNYII 122


>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = -2

Query: 304 YNIHDRCLYYP*EIPKDQFWENSL 233
           +++HD  L      P++QF E+SL
Sbjct: 155 FSLHDNKLITMYRFPQNQFKESSL 178



 Score = 21.4 bits (43), Expect = 5.8
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = -2

Query: 295 HDRCLYYP*EIPKDQFWENSLGIGNYVRF 209
           +DR LY+     + + W N+  I NY  F
Sbjct: 259 NDRILYFHSLASRVESWVNTSVIRNYTLF 287


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -1

Query: 212 FYEINSNSIFNFLNLED 162
           +YE+ SN  FNF  + D
Sbjct: 310 YYEVGSNVPFNFKFITD 326


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 13/45 (28%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
 Frame = -3

Query: 390 VMLVFSILDGAGS*LPLPFRYAVVYYFYNTI-FMIDAFTIPKRFR 259
           ++LV  IL      LPL  +Y +  +  NT+  ++    I   FR
Sbjct: 279 LLLVSKILPPTSLVLPLIAKYLLFTFIMNTVSILVTVIIINWNFR 323


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 130,981
Number of Sequences: 438
Number of extensions: 2573
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)