Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS329H08f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein T...    27   1.7  
SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1 |S...    26   3.0  
SPAC19A8.08 |upf2||nonsense-mediated decay protein Upf2|Schizosa...    26   3.9  
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    26   3.9  
SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce...    25   6.8  
SPAC25G10.02 |cce1|ydc2|mitochondrial cruciform cutting endonucl...    25   9.0  
SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pomb...    25   9.0  

>SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein Trt1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 988

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 10/29 (34%), Positives = 20/29 (68%)
 Frame = +1

Query: 316 VYNTYLMPI*ESIFHNAEKVDDLSKTIAF 402
           +YN++++PI +S F+  E  D  ++T+ F
Sbjct: 431 LYNSFIIPILQSFFYITESSDLRNRTVYF 459


>SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1842

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = -2

Query: 367  QHCGILILK*ALDKCYKPTVEKLIQNVL 284
            +HCGI I++  L   Y P  ++L+Q V+
Sbjct: 1056 EHCGIRIIEAELFHGYNPEKKELLQEVV 1083


>SPAC19A8.08 |upf2||nonsense-mediated decay protein
           Upf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1049

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 12/25 (48%), Positives = 13/25 (52%)
 Frame = +1

Query: 163 KKLVSKIGHD*QFFLENTLHFQKMP 237
           KKL S +    Q  LEN LHF   P
Sbjct: 610 KKLASALASQDQLVLENALHFVNPP 634


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 4924

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +1

Query: 226 QKMPPLS*YIHTLNCLMSILKHF 294
           +K PPL  Y ++ NCL  I KHF
Sbjct: 871 EKKPPL--YSYSKNCLECIQKHF 891


>SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1610

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -1

Query: 407 HSNAIVFDRSSTFSALWN 354
           H    VFD++S F++LWN
Sbjct: 457 HCLQSVFDKNSDFASLWN 474


>SPAC25G10.02 |cce1|ydc2|mitochondrial cruciform cutting
           endonuclease Cce1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 258

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 13/53 (24%), Positives = 25/53 (47%)
 Frame = +2

Query: 338 LFENQYSTMLKRLMIYQKQLHLNGAARFPEPSLRIKNLVSPYITSLFPNKCNT 496
           LF   +      +++ ++Q + +G A  PE +LR+  L S      +  K N+
Sbjct: 101 LFNTLHEKFNPHVILMERQRYRSGIATIPEWTLRVNMLESMLYALHYAEKRNS 153


>SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1647

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
 Frame = +2

Query: 344  ENQYSTMLKRLMIYQKQLHLNGAARF-PEPSLRIKNLVSP-YITSLF 478
            EN Y ++L  L ++QK    NG  +  P      + L++P  +TS F
Sbjct: 1401 ENLYGSLLSILTVFQKHTSANGGDKVDPVFKDAFQKLITPNLLTSQF 1447


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,968,686
Number of Sequences: 5004
Number of extensions: 35967
Number of successful extensions: 55
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 55
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)