Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS329H05f
         (428 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19C2.09 |sre1||sterol regulatory element binding protein Sre...    25   5.0  
SPCC1840.03 |sal3|pse1|karyopherin Sal3|Schizosaccharomyces pomb...    25   6.6  
SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex lar...    25   6.6  
SPBC1709.14 |||peptide N-glycanase |Schizosaccharomyces pombe|ch...    24   8.7  
SPBC27B12.03c |||lathosterol oxidase |Schizosaccharomyces pombe|...    24   8.7  

>SPBC19C2.09 |sre1||sterol regulatory element binding protein
           Sre1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 900

 Score = 25.0 bits (52), Expect = 5.0
 Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
 Frame = +1

Query: 31  VMKNIYTNDIIN-ILFEIHXRSITINKIEESTISRQKNVLXVRHDKGIQMYEFSHN 195
           V+ + Y  D+++ +L E   R + I++IEE      KN   +RH    ++  F  N
Sbjct: 698 VLASWYAADLLDALLMESLSRKVEISEIEEIISLCPKNSSIIRHALLAKLVLFPEN 753


>SPCC1840.03 |sal3|pse1|karyopherin Sal3|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1095

 Score = 24.6 bits (51), Expect = 6.6
 Identities = 14/48 (29%), Positives = 21/48 (43%)
 Frame = +1

Query: 139  NVLXVRHDKGIQMYEFSHNXXCIDKNIDCSEXHVPTTXTXPAEKLFSG 282
            N L V HD+    Y ++     +++N       +PT  T  AE   SG
Sbjct: 1003 NTLPVTHDEDDAPYAYTFLAELMEQNHVAVASQMPTIITILAETFASG 1050


>SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex large
            subunit Nuc1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1689

 Score = 24.6 bits (51), Expect = 6.6
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +1

Query: 7    LFVYFRXIVMKNIYTNDIINIL 72
            ++ ++  I M +IYTNDI  IL
Sbjct: 1552 IWEFYNEISMNDIYTNDIAAIL 1573


>SPBC1709.14 |||peptide N-glycanase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 333

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 10/34 (29%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = -3

Query: 423 GMKPAGDQEKWHYVHQIV*HRWVMCPH-RRFQKH 325
           G  P  ++EKW+ V  +  ++  +C H +RF ++
Sbjct: 116 GNGPPNEEEKWNGVRNVELYQCNVCGHNQRFPRY 149


>SPBC27B12.03c |||lathosterol oxidase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 329

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 9/32 (28%), Positives = 17/32 (53%)
 Frame = -3

Query: 390 HYVHQIV*HRWVMCPHRRFQKHVCIQHXWSVP 295
           +++H+ + HRW+  P  +      + H W VP
Sbjct: 167 YWIHRALHHRWLYAPLHK------LHHKWIVP 192


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,599,787
Number of Sequences: 5004
Number of extensions: 28367
Number of successful extensions: 50
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 50
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 154448264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)