Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS329H05f
         (428 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_1169 - 11058752-11058895,11059727-11059822,11060200-110603...    27   4.9  
09_04_0117 + 14813472-14814113,14814194-14814404,14814552-148148...    27   6.4  
11_04_0202 + 14771402-14771644                                         27   8.5  

>07_01_1169 -
           11058752-11058895,11059727-11059822,11060200-11060308,
           11061299-11061300,11062946-11062974,11063429-11063480
          Length = 143

 Score = 27.5 bits (58), Expect = 4.9
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = +1

Query: 334 EPAMXAHNPTMLDDLVNIMPFLLVSSXFHTS 426
           EP    +  T + D  N M +LLV S FH S
Sbjct: 61  EPRRFTNGNTTMTDQANYMSYLLVISAFHFS 91


>09_04_0117 +
           14813472-14814113,14814194-14814404,14814552-14814846,
           14815059-14815448,14815528-14815605,14815692-14815926
          Length = 616

 Score = 27.1 bits (57), Expect = 6.4
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = -2

Query: 358 GYVPXSPVPKACLYTTYXECTYQTLDQRTAFQ 263
           GYV   P PK+  Y  +  C Y++L    A Q
Sbjct: 133 GYVAPFPWPKSRDYVPFANCPYKSLTVEKAIQ 164


>11_04_0202 + 14771402-14771644
          Length = 80

 Score = 26.6 bits (56), Expect = 8.5
 Identities = 11/28 (39%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
 Frame = -2

Query: 400 GEMALCSPNRLASLGYVPXSPV-PKACL 320
           G MA  +PN L   G++P  PV  ++C+
Sbjct: 35  GSMAAAAPNGLTYKGFIPNQPVCARSCV 62


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,240,617
Number of Sequences: 37544
Number of extensions: 150292
Number of successful extensions: 275
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 263
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 275
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 802495716
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)