Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS329H05f
         (428 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z77136-5|CAB00882.1| 1152|Caenorhabditis elegans Hypothetical pr...    29   1.9  
AF016446-4|AAC24164.1|  321|Caenorhabditis elegans Serpentine re...    28   3.3  

>Z77136-5|CAB00882.1| 1152|Caenorhabditis elegans Hypothetical
           protein ZC376.6 protein.
          Length = 1152

 Score = 28.7 bits (61), Expect = 1.9
 Identities = 20/90 (22%), Positives = 39/90 (43%), Gaps = 2/90 (2%)
 Frame = +1

Query: 145 LXVRHDKGIQMYEFSHNXXCIDKNIDCSEXHVPTTXTXPAEKLFSGQVF--DRYTPXMLY 318
           + ++ DK   + E       I K+ D S    PT     + +  S Q+     Y P +L 
Sbjct: 144 MMLKKDKDTFIDEIVDLVRDIQKHNDASMSSQPTWIDRLSVEKISNQILMLQNYLPSLLT 203

Query: 319 TDMLLEPAMXAHNPTMLDDLVNIMPFLLVS 408
            + ++   +  H P ++++L+   P  LV+
Sbjct: 204 VEEIINALLFEHGPDVIENLIIETPENLVT 233


>AF016446-4|AAC24164.1|  321|Caenorhabditis elegans Serpentine
           receptor, class h protein23 protein.
          Length = 321

 Score = 27.9 bits (59), Expect = 3.3
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = -1

Query: 209 SIHXXLCENSYICIPLSXRTXSTFFCLDIVDSSIL 105
           S H   CENSY+ +P S    ++   L I +  I+
Sbjct: 174 SAHFLTCENSYLFVPFSDYVSTSIMILWIAECVII 208


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,708,911
Number of Sequences: 27780
Number of extensions: 154313
Number of successful extensions: 296
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 294
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 296
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 713998766
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)