Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS329H04f
         (394 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC890.08 |rpl31||60S ribosomal protein L31|Schizosaccharomyces...   114   5e-27
SPAC1F8.03c |str3||siderophore-iron transporter Str3 |Schizosacc...    27   1.0  
SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr ...    26   2.4  
SPAC4D7.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   3.2  
SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor Sp...    25   5.5  
SPBC36B7.04 |||tRNA dihydrouridine synthase Dus1 |Schizosaccharo...    25   5.5  
SPAC806.08c |mod21||gamma tubulin complex subunit Mod21|Schizosa...    24   7.3  
SPBC1198.14c |fbp1|SPBC660.04c|fructose-1,6-bisphosphatase Fbp1 ...    24   9.7  

>SPAC890.08 |rpl31||60S ribosomal protein L31|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 113

 Score =  114 bits (274), Expect = 5e-27
 Identities = 56/102 (54%), Positives = 73/102 (71%)
 Frame = +1

Query: 19  KSAINEVVTREYTVNLHKRLHGVGFKKRAPRAIKEIRKFAEKQMGTPDIRVDTRLNKFLW 198
           KSAIN+VVTR+YT+++HKRL+GV FKKRAPRAIKEI  FA+K M T ++RVD  LNK +W
Sbjct: 6   KSAINQVVTRDYTIHMHKRLYGVSFKKRAPRAIKEIVAFAQKHMQTKEVRVDPSLNKEVW 65

Query: 199 SKGVRNVPFXXXXXXXXXXNDDEDSAHKLFTLVTYVPVASIK 324
            +G+RNVP           +D++D A  L+T V  V VA+ K
Sbjct: 66  KRGIRNVPHRLRLRLSRKRSDEDDKA--LYTYVQAVDVANPK 105


>SPAC1F8.03c |str3||siderophore-iron transporter Str3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 630

 Score = 27.1 bits (57), Expect = 1.0
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = -2

Query: 192 EFV*ASVYSNVRSSHLFFSELSDFFDCSWGTLFKSNTMKSF 70
           E V  S+Y N R  +L ++       CSW +  +S+T  S+
Sbjct: 68  EAVRDSIYQNKRGMYLAYAFGIAILACSWASAIQSSTTYSY 108


>SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 673

 Score = 25.8 bits (54), Expect = 2.4
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -3

Query: 368 GVYSWLASTFSVCKPLID 315
           GV  WLAST+S C  +++
Sbjct: 464 GVVCWLASTYSFCDGIVN 481


>SPAC4D7.07c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 600

 Score = 25.4 bits (53), Expect = 3.2
 Identities = 9/26 (34%), Positives = 17/26 (65%)
 Frame = -3

Query: 392 FFFFFYTKGVYSWLASTFSVCKPLID 315
           FFF +Y K    ++++ FS+ K L++
Sbjct: 74  FFFVYYCKQALEFISTVFSIIKFLLN 99


>SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor
           Spt6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1365

 Score = 24.6 bits (51), Expect = 5.5
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = +1

Query: 28  INEVVTREYTVNLHKRLHGVGFKKRAPRAIKEI 126
           INE VT +Y  N+   + G+G  ++A   +K+I
Sbjct: 860 INEAVTNKYEANILPYIAGLG-PRKADYVLKKI 891


>SPBC36B7.04 |||tRNA dihydrouridine synthase Dus1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 399

 Score = 24.6 bits (51), Expect = 5.5
 Identities = 14/42 (33%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
 Frame = -3

Query: 212 LTPL-DQRNLFKRVSTRMSGVPICFSANFRISLIALGARFLN 90
           L P+ DQ  L  R+  R SG  +C+S  F   L      + N
Sbjct: 22  LAPMVDQSELPWRILARRSGADLCYSPMFHSRLFGESEDYRN 63


>SPAC806.08c |mod21||gamma tubulin complex subunit
           Mod21|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 618

 Score = 24.2 bits (50), Expect = 7.3
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -1

Query: 313 QQARKSLV*ITYVRNLHHHYVFVKASH 233
           ++A+KSL    + R  + HYVFV   H
Sbjct: 452 EEAKKSLWSKRFSRFYYGHYVFVNTCH 478


>SPBC1198.14c |fbp1|SPBC660.04c|fructose-1,6-bisphosphatase Fbp1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 347

 Score = 23.8 bits (49), Expect = 9.7
 Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = -2

Query: 228 TEGNISDSLRP-KEFV*ASVYSNVRSSHLFFS 136
           ++G+ISD LRP KE V A       S+HL  +
Sbjct: 160 SQGDISDVLRPGKEMVAAGYTMYGASAHLLLT 191


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,543,345
Number of Sequences: 5004
Number of extensions: 28508
Number of successful extensions: 48
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 48
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 130061696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)