Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS329H03f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC330.02 |rhp7|SPCC613.14|Rad7 homolog Rhp7|Schizosaccharomyce...    27   1.3  
SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase Prp16|...    26   3.0  
SPBC8D2.14c |sed5||SNARE Sed5 |Schizosaccharomyces pombe|chr 2||...    25   6.8  

>SPCC330.02 |rhp7|SPCC613.14|Rad7 homolog Rhp7|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 563

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 14/39 (35%), Positives = 23/39 (58%)
 Frame = -3

Query: 315 SMDLLFQ*RIHVRINQPIENKICVPSMFHLNINSILYLE 199
           S++L    RIHV +   I +  C P++  LN++ I YL+
Sbjct: 324 SLELTDTARIHVSVINAIVD--CCPNLISLNLSRIFYLD 360


>SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase
           Prp16|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1173

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +1

Query: 262 DWLVNSNMNSLLKEQIHRP 318
           DW +NS   +LL +++H P
Sbjct: 288 DWYMNSESQNLLGDEVHNP 306


>SPBC8D2.14c |sed5||SNARE Sed5 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 11/35 (31%), Positives = 22/35 (62%)
 Frame = -3

Query: 219 NSILYLEQSLAYSSDTYKNGFEVKANGIEQYGDRT 115
           N ++ L+ SLA +S T+K+  E++   ++   +RT
Sbjct: 122 NVVVSLQNSLANTSMTFKDILEIRTQNMKASQNRT 156


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,034,893
Number of Sequences: 5004
Number of extensions: 38518
Number of successful extensions: 77
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 77
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)