Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS329H03f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_05_0121 + 22525782-22525998,22526526-22526609,22526797-225268...    29   3.0  
03_01_0418 - 3211687-3211933,3212016-3212164,3212443-3212551,321...    27   9.1  

>05_05_0121 +
           22525782-22525998,22526526-22526609,22526797-22526820,
           22527118-22527233,22527691-22527936,22528176-22528256,
           22528666-22528782,22529139-22529492
          Length = 412

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 19/70 (27%), Positives = 33/70 (47%)
 Frame = -3

Query: 375 ISTLLIVLYAMLLYFNA*QRSMDLLFQ*RIHVRINQPIENKICVPSMFHLNINSILYLEQ 196
           + +LL +L   +L+F A  +     ++  I  R  QP+   +    M  L +  IL   +
Sbjct: 192 LDSLLDLLSGFILWFTAFSKKTSNPYRYPIGKRRMQPLGILVFASVMATLGLQIILESTR 251

Query: 195 SLAYSSDTYK 166
           SL Y  DT++
Sbjct: 252 SLFYDGDTFR 261


>03_01_0418 -
           3211687-3211933,3212016-3212164,3212443-3212551,
           3212650-3212840,3212967-3213102,3213216-3213716,
           3213819-3213923,3214008-3214095,3214195-3214266,
           3214692-3214762,3215726-3216008,3216388-3216463
          Length = 675

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = -2

Query: 151 QSKRHRTVRRSHARCNDAPIDIDA 80
           +SK  R+ RRSH R     ID+DA
Sbjct: 164 KSKTERSSRRSHERSRRGKIDLDA 187


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,372,462
Number of Sequences: 37544
Number of extensions: 219198
Number of successful extensions: 461
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 455
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 461
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)