Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS329H03f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z29560-5|CAA82664.1| 1385|Caenorhabditis elegans Hypothetical pr...    28   3.5  
AF024503-14|AAG24088.2|  292|Caenorhabditis elegans Serpentine r...    28   4.7  
AF016669-1|AAB66098.3| 1758|Caenorhabditis elegans Signal elemen...    28   4.7  
AF239999-1|AAF63495.1|  203|Caenorhabditis elegans MDF-2 protein.      27   6.2  
AC084158-32|AAM15619.1|  116|Caenorhabditis elegans Mad (yeast m...    27   6.2  
AC084158-31|AAK68576.1|  203|Caenorhabditis elegans Mad (yeast m...    27   6.2  
Z81564-3|CAB04577.1|  536|Caenorhabditis elegans Hypothetical pr...    27   8.1  

>Z29560-5|CAA82664.1| 1385|Caenorhabditis elegans Hypothetical
           protein K03H1.5 protein.
          Length = 1385

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 9/27 (33%), Positives = 18/27 (66%)
 Frame = +1

Query: 244 YANFVFDWLVNSNMNSLLKEQIHRPLL 324
           YA+ +F W+ N+ ++++    +HRP L
Sbjct: 198 YADAMFQWIGNTKISNVFFRSVHRPRL 224


>AF024503-14|AAG24088.2|  292|Caenorhabditis elegans Serpentine
           receptor, class x protein21 protein.
          Length = 292

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +3

Query: 165 FYKCPMSTQDSVPDIKYCLYLG 230
           FY CPM   D  P +K+  Y+G
Sbjct: 59  FYVCPMQLTDFEPFVKFSKYIG 80


>AF016669-1|AAB66098.3| 1758|Caenorhabditis elegans Signal element
           on autosome protein2 protein.
          Length = 1758

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = -3

Query: 96  PSISMPYYHAQQ*RHTRMQ 40
           PS S PYYH QQ +H   Q
Sbjct: 44  PSASHPYYHQQQPQHQHQQ 62


>AF239999-1|AAF63495.1|  203|Caenorhabditis elegans MDF-2 protein.
          Length = 203

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = -3

Query: 246 VPSMFHLNINSILYLEQSLAYSSDTYK 166
           V   FH  +NSILY  Q   Y SD++K
Sbjct: 19  VKEFFHFGLNSILY--QRALYPSDSFK 43


>AC084158-32|AAM15619.1|  116|Caenorhabditis elegans Mad (yeast
           mitosis arrest deficient)related protein 2, isoform b
           protein.
          Length = 116

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = -3

Query: 246 VPSMFHLNINSILYLEQSLAYSSDTYK 166
           V   FH  +NSILY  Q   Y SD++K
Sbjct: 19  VKEFFHFGLNSILY--QRALYPSDSFK 43


>AC084158-31|AAK68576.1|  203|Caenorhabditis elegans Mad (yeast
           mitosis arrest deficient)related protein 2, isoform a
           protein.
          Length = 203

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = -3

Query: 246 VPSMFHLNINSILYLEQSLAYSSDTYK 166
           V   FH  +NSILY  Q   Y SD++K
Sbjct: 19  VKEFFHFGLNSILY--QRALYPSDSFK 43


>Z81564-3|CAB04577.1|  536|Caenorhabditis elegans Hypothetical
           protein K05C4.3 protein.
          Length = 536

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 14/45 (31%), Positives = 22/45 (48%)
 Frame = -3

Query: 222 INSILYLEQSLAYSSDTYKNGFEVKANGIEQYGDRTRVVTTLPSI 88
           IN +  L   L   S T     E+++ G+  YG  T++   LPS+
Sbjct: 109 INIVGILNDILNKGSQTKLKHLEIRSAGLVSYGWSTKISDMLPSL 153


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,150,001
Number of Sequences: 27780
Number of extensions: 210173
Number of successful extensions: 483
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 472
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 483
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)